G247975


Basic Information

Item Value
gene id G247975
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1747770 ~ 1752339 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281458
ATGTATGTCTTATTGTCTTGCTCTTTAAAAAAAAAAAAAAAAGGAACGTCTTAAATGTTAAAAGGACAGACAAAGATATCACTTTCCTCAGTGGACATTCAAACTGATTTTATGATTATGAATGACCTGAAGAATATCAGCTACATGCTACGGCCTACAGCCGAATCACAGCCGAGCTGATATACAACCATATCACACGGCTACTCGTTGCTCATATATATATATATATATATANNNNNNNNNNTTGGTACACTACAATATTAGAGGTTACAATTAACAACAGAAGTTTTATATTCAGCTGCTGTTTATTTCCAGATATAATAATTACACTCAAATAAACACTGAAATGTTTGTATAAAACTTAGTATCAAATAAGGTAGTTTTCATAAGCACTTGTTGTCTTCATGGCAAATTTACACAAACATAATTAACATTAAATAAGCTCCTCTCTAGTGTTTTTTTTATATATATATATATATATAGATAGCTAAGGAACTGTAAACATTGGAAAACGTTCCTGAGGTAAATTTGACATGTGACATATTGTTCACAAGCTGTTTTATTGATGTCTTTCCGCAGTTGAAGCACAAATAAAGTGATTACATGAGATGTGATACATTCTGGTAAGTTGTACTAGGCTATATCTTTCAACATACCTTTGATATTCATGCATGTTTTTCGAGATATAACTTGTATTGAAGAGGAAGAAAAGACTCGCGCTCCGCGCTGCCGCCTGAACTGAGGCATTACAGCGATCTGACACATTTAAAAGCGTCAAAACGCCATTTATTGTTTGAATTTCATGATAAAATGGACAGAATTTGAAAACTGAAACTGTATTCTTATCAGAAGTAACAAAGCACAAAGCCTTTTGCGATTATTGGACCGGAGGCGCTACAAATACTATTTGATGTAGCAAAAAATAAAAATAAAAACGCAGACCTGGCAACCCTGGCTTGAACTACGGGTGATTCATAGGGTCAAAAAGAGCCTGCTTTAGCGTCACTATTTTTAAACTGTTAATGCGTTAAAATTCAACACAAAAGCTGGTTTGCCAACCGCCAAGAAGAAGAAATTCAACACAAGAGTGATTTTCTCGACACACAGTATGTATGAGTTGCAGTCTGAACACGTTTTTCTGCACCCTTTTGATTGACAGGATATAATCAGCCCTGATCATCGGCCGTTATAAACAATCGGCCGATGGCCGATAGTGATGATAATAGCTTTTATCGGCCGATACCAATTGTTGGCCGATACATCGGTGCATCTCTAATATATATATATATAATGGGCCTGAAAGGGTTAAAGCCATCAGGAAATCATGTGGGAAGTTAAAAATAGTCAGCATATTAAAGAATGACTTTCAGAATGTTATTGTGAAATATCAACCTACTAATTTCAGAGGAAGAAGAGGAATTCCTTGACAAGAATGTCAAATATTCTATTTTGGGTTTGCAAGATACTGGACCACTTCAAACCTCTCTGTCACCAAAGCCCCTCCCATGCTCTAATGGTTAAATTTAGACTCCATAGGCAGATAGCGTGTTCTCTAAAATGAGTGGCTTTGCATTGGACATGTCAGCATATGAGAGGTTGCCCGTAGGTGTGGATGATGTGCATCAGCTGACTGCATGTCCAGCACGTGTCCTTCCCTCCAGCCGCAGTCATATCATGTCAACAGCAACACGCTAGTTCACTGGCTTTCCATCCTACTTCAATCAAGCTTGTTTAGCATGAATTTTTGCCTTCCCACACTAATAGCCTTGATTTGCATTTTTTACATTCTTAAGAAGATAATTTGCTTATACACTTCAGATAATACTGTATATCTTGATTTAGTTATATTTTGAGGTTTTTAATGCATGAAACTTACAGGGTTTTTTTTTTTACATTTATTTACACAATTTGCCAAACTATGATACTTTTTATGCTACTTTTGCATTTTTTTCAAAGCTTGAAGCTTTATTCGCCATTCATTTTAATTACATTGAAAAGAACAACCATTTTCTCTCTACTTTTGTGTTCTACTGGGGAAAAAAGGTCTTCTTAAAGGAATGAGGATGATTAAATGACAGAATTGAAATATTTGAGTGAATAATTCTTTTAAGGTCTTAATGGAATTTGTGTAGTAAATTTATCTTCATAAAGTTTAGACAATTTTATTTGAAAACAAGACAAAAATACTGAAGAAAAATGTTTCAGTGCACTCCTTTTATCTGCATATTTTCCTCTGTGTCCCTCATTACTGAAAGGAACACTGTACTTTATCTTTGTGTTTTCTGTGCTGTATTTTCTAAAGTGATTTAAAATCCACATACTTTACTTTCTGGGAATATCAGTCAGTGATTTGTCTTCATATTTGCTAAAGAAGGTGTAGCTAGTGCATCAGAAGAATATAAATCAAAATATATTAGGTTATGTAATCACAATGTTTTTTTTTTTTTTTTTTTCATCTTATTACGTAATCTTATGGCAATACTCTTGTCAGTGATTCATTGTGCATTGTTTTAAAAGCAAACAACATTGATGGTGCGACTGTTACATTTTGATTTTAGATCCATTTGTGGGTTTGTGTGTGCACCTGACCATAGTTGACAGTGATACTGTCTGAGGTAATGCAAATATGAGTCTCTCAACGTCTCCAAACATGCCAGATTTCCTTTAAAATTCCCTCTTCACTTGCTGTCAGTGGTGTTCTTAGTGTGTTCTCAGTTTTCAGACACTGGCTTCTTGTTCCTGTGTATCTGAACACTTGCGTGCCATATCAGAAACAAACTTGTTCTGTGGGATTTTAACTGCCAATCATCCGTGTAAAAAACCGAGAGGTTGTCTTGGTTTTTGAGCACTGTGTGTTTGCTCAGAAGTATCATGCCAATTGAAAGTGACAGGGCACGAGCCACTTCAGATGTTGAGCCAAAATTTTAAATGCAACTCTGAACAATTATTTAAAATTATCTCATTACTATATTACTATATGTTGCATGACTGTTTTTGACAAAAGTGTTTGTTTTCCAGGGAATAGTTGTTGTTTTTTTAATTACCATACAATGAAAATGATTGGCTGTCATGTTTTGTGCATGTTTATGTAGTTTATATAAAATATCATATTAAAGGATAGTTTACCCAACAAAAAAAATGTCATGTTGAACACAAAAGAAGATATTTTAATAAATGTTTTAATGTTTTTTCATCCAACAATGCAAATCATTGGGGTCCAATGTTATTTGGACCCCATTGACTTTCATTGTACGGATGAGAACAATTCAAATGTTCTTCAAAATCTCCTTTGTGGTCCACAGAAGAAAGTAAGTCATACAGGTTTGGAACCACACGAGGCTGAGTAAATTACAGAATTTTCACTTTTGTATGTACTTCTCTTTAACTAGGGATTTGAATCAATTCCATGCCAAACAAAAACCGTACCACTAAACCAACACATCTTACACTTTTAAAATATGCTCTGAAGATCATTCCTCTCCTTGAAGGCCTCCTCATTCCCATGCGGGAATTGCAGTGAGGCCTTTGTTATGGGCTGTGGTGCTTCCTTCTTTGAATTACTACCTTACTATCTTAATGCAAGCATCTACCTTTGGCAGGACTCCCATGCGTTTGATCTCAGGGAGTGTAGACACTAGACGGCCTCCTGGCTCTGCTCAGATACGTATGTCATGGGGTTTGTTTGGGCTAGAATAAAAAAAGCTGTAAAGGCTGTTGCCTTCTTCCACAGCGCCTATGGAGGATAAAGCTGTCCACAATCCAACATCCAGTGTCCTCAAGCTTTGTATGTGGATATACTTTCACACATGTGCATTCTGATCAGAGACTGTGTTTGGTGATTGATTTAGCCCTGCTGATCATATGAGCAAATTCTCACTGGTCTCCTTAATGCCTATTTGTTGTGTAAATTTGAGACCCATTAAAGCTCCATTACCCTATCACATTAGATCATAAAATGTTCCCAGCTCAGGCTGCAATTTAATCATAAACTTGAGAAACATCTGTGTATGCGTCTACCCTGAGGAGGAGGTCTACAGTAATGGTTCTTGGCTGGATCAAGCTTTCTGTGTGCAGCAGGTTTAATTATATCGGTGAGTGCAGCAAGGCCTGTGGGGCTACAGCTGCATGATTCAACCCTGTTGACTTTGCCCACGTCTCTCTGGCTAATTACTTCACACTGCCTCTCCATTACCCCTCATATACTGAAGGCAACATCAAAACACGTGCTCTGTTCCAAAACCTAGTGAGCTGCCTGTGGAGGGAGTGTTTTAAGGCATTATATGAACACTCTTAACGTAGAGAAGATGATCCCAGAATGCATTGCAGCAGCTCAGTGACAAAAAAAAAAAAAAAAAAATCTAAGGTGTGAGACGAGGTGGAGAAAGCAAGAGAAATTGATTATGAATTAACTTTACGTACTGAAAAATATCAATAAAAATTTTAGTGAGTTTATTATATAAAATGATTTATTATACACTACTGTTCAAAAGTTTGGGGGTCAATAAGATTTTGTTTTTCATCAAAAAAAGAAAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281458 True 4536 lncRNA 0.36 2 1747770 1752339

Neighbor

gene id symbol gene type direction distance location
CI01000058_01625351_01664692 PIK3C2B coding upstream 81976 1625351 ~ 1665794 (+)
CI01000058_01580247_01591754 NA coding upstream 155517 1579663 ~ 1592253 (+)
CI01000058_01496481_01498802 NA coding upstream 247960 1494870 ~ 1499810 (+)
CI01000058_01431719_01434294 CHIA.2 coding upstream 313257 1431559 ~ 1434513 (+)
CI01000058_01391493_01394283 NA coding upstream 353351 1391493 ~ 1394419 (+)
CI01000058_01794468_01800421 KISS1 coding downstream 42129 1794468 ~ 1800421 (+)
CI01000058_01838039_01842964 NA coding downstream 85700 1838039 ~ 1843230 (+)
CI01000058_01957358_02009847 ATP2B4 coding downstream 205019 1957358 ~ 2009847 (+)
CI01000058_02028188_02037502 MDM4 coding downstream 275810 2028149 ~ 2037628 (+)
CI01000058_02052152_02085378 NA coding downstream 299624 2051963 ~ 2085455 (+)
G247947 NA non-coding upstream 14278 1714284 ~ 1733492 (+)
G247948 NA non-coding upstream 41387 1686779 ~ 1706383 (+)
G248112 NA non-coding upstream 70617 1676857 ~ 1677153 (+)
G248104 NA non-coding upstream 129850 1617351 ~ 1617920 (+)
G248103 NA non-coding upstream 130756 1616576 ~ 1617014 (+)
G248118 NA non-coding downstream 71450 1823789 ~ 1823990 (+)
G248122 NA non-coding downstream 79730 1832069 ~ 1832368 (+)
G248128 NA non-coding downstream 84969 1837308 ~ 1837522 (+)
G248135 NA non-coding downstream 99335 1851674 ~ 1851901 (+)
G248138 NA non-coding downstream 103971 1856310 ~ 1856528 (+)
G247940 NA other upstream 291323 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 459500 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1150599 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1292026 434913 ~ 455744 (+)
G250039 NA other downstream 2942069 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3074037 4864571 ~ 4888216 (+)

Expression


Co-expression Network