G249014


Basic Information

Item Value
gene id G249014
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1755961 ~ 1768102 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282615
CCTACTAAATGGGGCTCATCGACATATTGGAGAAAACTCACTCAGGGGTCCTCAGAGATGGGGGGAAGGGTCTTAAAGGCAAACTTGCGGCTGATGTTGTCCGATGCCTGGACTGGTCCAATCTTGAAGCTGAGAAGAGGAAGGCTGCCTAAGACTCCTTCTTCTTTATCGTCTGGATGGAATAAACATTAAAAAAGGAGGAAAAAAACAAACATTAATGCTAAAAAAACAAAAAAACAAAACAAAAAAAAAAACATCAGTATTATATCATTCCAACCTGGATTTTAAAAAAGCTGATTATCCAATTAGGTGAGAAACAACTCTGTACTAAATCAGAAAAGTCCAACTTTCTGTTGTGTGCCGCTACATTGGTGATGGTAGGCAGCGGTAATAGAAAAGCAGGTAAACTGCAGGTGAATCCCATAATAGATATCCATTTTTATCCCAGCGCAAAGAAACGCTAATGACACTGAAGCAAGCAGCGGCGCACAGCCTGGAAGAGAAGTGCTCAGGCTGGTTAAATAATGGAGCACATCGTTAAATTTTCATAGCGAGGAGGGCATCGGAGATCCAGTGTTCTCGCTCTCGATCTCCCGTACTGAGAGCTGCTGCCGGGGAAATGCAGTGAACCCACCCGCGTGTGTGTGCGTGTGTTCTGACAGCACTGTGCGTGCGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU282615 True 678 lncRNA 0.44 2 1755961 1768102

Neighbor

gene id symbol gene type direction distance location
CI01000058_01694694_01723697 NA coding downstream 31753 1694679 ~ 1724208 (-)
CI01000058_01680894_01693752 NA coding downstream 61756 1680794 ~ 1694205 (-)
CI01000058_01528111_01564969 NFASC, NFASCA coding downstream 190992 1527499 ~ 1564969 (-)
CI01000058_01510773_01517931 NA coding downstream 236779 1510350 ~ 1519182 (-)
CI01000058_01462558_01465691 CHIA.1 coding downstream 289832 1462523 ~ 1466129 (-)
CI01000058_01807681_01819809 NA coding upstream 39569 1807671 ~ 1819809 (-)
CI01000058_02049299_02051461 LRRN2 coding upstream 281187 2049289 ~ 2051809 (-)
CI01000058_02100559_02106600 NA coding upstream 331916 2100018 ~ 2106652 (-)
CI01000058_02192060_02196086 NA coding upstream 423694 2191796 ~ 2196086 (-)
CI01000058_02198525_02205429 NA coding upstream 430394 2198496 ~ 2205437 (-)
G248958 NA non-coding downstream 133008 1621013 ~ 1622953 (-)
G248955 NA non-coding downstream 138307 1617451 ~ 1617654 (-)
G248943 NA non-coding downstream 146144 1605938 ~ 1609817 (-)
G248916 NA non-coding downstream 257744 1446661 ~ 1498217 (-)
G248914 NA non-coding downstream 321032 1431615 ~ 1434929 (-)
G249024 NA non-coding upstream 22632 1790734 ~ 1791212 (-)
G249077 NA non-coding upstream 55912 1824014 ~ 1824332 (-)
G249078 NA non-coding upstream 57173 1825275 ~ 1825552 (-)
G249082 NA non-coding upstream 61340 1829442 ~ 1829792 (-)
G249086 NA non-coding upstream 69636 1837738 ~ 1837976 (-)
G247592 NA other downstream 1101012 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 1090381 2858483 ~ 2861491 (-)
G250230 NA other upstream 1920541 3688643 ~ 3696711 (-)

Expression


Co-expression Network