G249003


Basic Information

Item Value
gene id G249003
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1995005 ~ 1998702 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282603
TCAGATCTAAAACACCACGCACGTATCTTAGCAGTAAGCTGCCAAATAGCAAAGACAGTTTCTCCAGGCATCTACAGTGGCAGAGTTGTGTGTAGATCACTGCGGTTGTAATTAAGCAATTAATACTCTCTCCTGGGACAATTGCTGGAAGAAACAGGAAAGTACCACCAAAGAGCAGCTTACCTGAGTCTGGATGCGGTTGAGTCCTCTGAACCACAGGATCTGTCCCCTGCGCAGCTCCATCTCAGCGAGGTCAATTTCATCCGCACCTTCAGTTAGCACCTCATCAGGGATGTCCTCTTTGGGGATGCCGTGACCGGCCTCCTTCAGGAACTTGAGGCGGTGGGTAGGGATGGCAGTGATGAACTGGCCCCAGAGCAGCTCACCAACACCTATGAACACACACCAGAGCCACTGATCGATGGTGAGGGCCGTGCAAGAGAATGGCTTCCCTCCAAACTGCACAATGATGATCTGCAGAGCAAAGGTTCCCAGTACGACGCAGCAGAAAATGGGGTTCCGGTAGATTCCCTCAAACACATTCCTCTCTCCATGGATCTTGCGGGCATTGATCTCGTTGAAGAGCTGCATCATGACAAAGACGTTGAAGATGATGGTGTAGTGTTCAGACGGTGGTGAATGGAGAGGGGTGTTCCGGCCGCTATCAATGCTAAAGAATTTCTCACCTTTTAGGGGCAGAAAAATGTTTTCTGTAAATAAGTGATGTGAAAGTTCAAAATGCATAGTGTTTCACGTCAAGAGGAGCACTGATGGGAATTTTCAATAAATATATGTTACTGTTAATTAAAAAAATACGGTCGAGTGTAATGTCCACTGAGATATAGTATGTATTCAAACTCCACAGAATGGAGTCTTCTGTGCAACTGTTCCTTAACCCACGGGCACTGTAACTCGTGATAAACTTGTCTAATCAGTCTGCAGAAGCACAACATGGGAACATTTACAGTAAAATCTCCTGAAGCACTATGACATGCTTTAGGTAGTATTTGATGTGATCTATCACATGGTAGGGAACAAAGATCAGTGTAATACCAAGATTTACAGATAGGCGGTCTATTACTGGCAGGTTTTCACTATGAAATTTTGAATTGGGATGGAGGCCTTTAACTCTTAACTTAATGCCTTAAACATGAAAGCCTAACATTGAAAAAAAAATACAATATATGTTTGACAAATACATTTTTATACATTTTTGAATGCATCTTTATTGCATTTATTAGTGTAAAAAAACAAGTGAGAGTAAAAGAATGAGAATAAGAAAACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282603 True 1287 lncRNA 0.43 3 1995005 1998702

Neighbor

gene id symbol gene type direction distance location
CI01000058_01807681_01819809 NA coding downstream 175196 1807671 ~ 1819809 (-)
CI01000058_01694694_01723697 NA coding downstream 270797 1694679 ~ 1724208 (-)
CI01000058_01680894_01693752 NA coding downstream 300800 1680794 ~ 1694205 (-)
CI01000058_01528111_01564969 NFASC, NFASCA coding downstream 430036 1527499 ~ 1564969 (-)
CI01000058_01510773_01517931 NA coding downstream 475823 1510350 ~ 1519182 (-)
CI01000058_02049299_02051461 LRRN2 coding upstream 50587 2049289 ~ 2051809 (-)
CI01000058_02100559_02106600 NA coding upstream 101316 2100018 ~ 2106652 (-)
CI01000058_02192060_02196086 NA coding upstream 193094 2191796 ~ 2196086 (-)
CI01000058_02198525_02205429 NA coding upstream 199794 2198496 ~ 2205437 (-)
CI01000058_02207230_02214219 NA coding upstream 207567 2206269 ~ 2214219 (-)
G248994 NA non-coding downstream 9620 1984163 ~ 1985385 (-)
G249118 NA non-coding downstream 71971 1921931 ~ 1923034 (-)
G249095 NA non-coding downstream 138751 1856041 ~ 1856254 (-)
G249094 NA non-coding downstream 142899 1851895 ~ 1852106 (-)
G249091 NA non-coding downstream 145646 1849128 ~ 1849359 (-)
G248999 NA non-coding upstream 73030 2071732 ~ 2087153 (-)
G249183 NA non-coding upstream 298863 2297565 ~ 2309005 (-)
G249186 NA non-coding upstream 316878 2315580 ~ 2321692 (-)
CI01000058_02235326_02347093 PPFIA4 non-coding upstream 323107 2235326 ~ 2347799 (-)
G249213 NA non-coding upstream 364679 2363381 ~ 2364654 (-)
G247592 NA other downstream 1340056 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 859781 2858483 ~ 2861491 (-)
G250230 NA other upstream 1689941 3688643 ~ 3696711 (-)

Expression


Co-expression Network