G247991


Basic Information

Item Value
gene id G247991
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1998870 ~ 2003167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281474
TTTTTTTTTTTTTAGCTCCAAACAGCATGTACATTGCTCAGAATGACATTATAAGTGAACATTCTGGACAGCCAGTGGCTGTTTTTGTGTAGACATCACCCTAGTGGCCTTCAAGCATCTCCATGGGTTCATTTGTGGAAAAGCAAGTCTCTTTAGACAGAGCAGGGACTTTGGTGGCCTAGGTTGAAAAGCAGCATGTGCCCTGGAGATGACACTCTTAAAATGCCAGTGGGGAAGCCAATGTCTCTCTGACTATATGCAAAACCTGCCTGGAGATATCAGGGGACTGTGCTTAGAGGGACTTGAATACAAATCCTTTTCACTCTGTCTCTGGAAATGCAACATTCGCTCACTTTCATCTAAAGATGTGCAAGTAAACGACTGGGAACAGACTTTTTTTTTTTCTTTTTTTTTTTATTTTTTTTTTGTCTCTAAGATTTTATTTTATAATTTTATTTATTATATGTATGTTTTTATTTTGTTAATGCTCAATTTACAGTAGCACTATGTCCTAACTACCCTGACACAACAGAAGTATAAAACGATATACCAATAAAGTCCATGTAAGAGTTGTGACCATCAGCACTGTCGTGCATCAAAATATTTTGACGGATGCTAGAGGAGGCAGAGAGCAAGAGAGATTTTCGGTGCATTTAACTGTGTAATCCTACTGACAGTGATATCTAATTGGCCAAAACAAAGTAAATATGTTGAGTAAATATCTGTACAATTGGCCACATTCATGAAATACAAACAGGATTAAAGTCTGTCAATCTTTTGTAAAAATCTTTTAAGTAAACTAACAATTCATTGCAACAACTTTTGCAAGAATGGATTTCCAAACAATTTGCACAGAAATTCATTCTACTCTTGTTTAATGAATTATTCCCTATAATGTTATTGATCATAGTAGTTAAAATATTTGGAGCAATTAATATGGGTTGGATGTGCACACTTTTCTATAATTTCTTTTAAAGAACAAAGCAGTACAGCTCTACTGTATTTAATGCATCAAATAAGATTTGATTGGTTATGATTTTGTCACTTCTCACAGCATTCAGCTCTCAATGATGAAGTAAAAATTACTTGATAAGCGAAACTTGACATTTCACACCTAGTTGGGATGAGGTGCTAGATCTGGTTGATGTATCAACACAGCCTTTTAAATGTTGTTGACCTGCACAGCATGTTCACTGAACGTGACAAACTCCCGGACAGAGAGACAGATGCAGGCTACTGACAGTTCTTCCTGTTTTTTTTCAGCACTTGTGCTCAGTACTTCAGTCACGTCACAGCTTTTCCCTTCTCTCTCTTGCTCTCTGCCTCTTCTCTGGAAGAATTCCAAATGGCATTTTTGTGCCCTTGAAGGGTACTATGGTAAGGGGATGCCACACATAGGATTGTTTCACATGAAAGTGAGCAACTGAATCCCTTCACATAGGATCTCATTCAGAGTAAAATTTTAAAAACAGTTTGGTGTTTTCAAAACAGAATAGAAAATAGCTTCAACTAAGTCACATTTAAAACATCTATTAAAACACTGTCAGGCTCAAGAAACACGCATGCATGCACAAAAATACATCACGTCTGCATTAAATGACATGCAGTGCAGAATTTGTTGTACCACCTAGCTAAGAAGCCTTGCTCTAACCTCAGTAACACGAGGACTCTTTCACTTTGCCAACATCTGTGTTGTGTGTTGTGGTCTGAATGAAAATGTATGTTTTGCAGCATAGTGTAGTCAACATTAGTAGTCAACATTTGAAGTGGATCAAAACCTTTCATCAAAGTTGTCCCAAAACGTTAATCCATGCTGTCCTAAGAAGAAGGTTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281474 True 1836 lncRNA 0.37 2 1998870 2003167

Neighbor

gene id symbol gene type direction distance location
CI01000058_01838039_01842964 NA coding upstream 155640 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 198449 1794468 ~ 1800421 (+)
CI01000058_01740599_01784355 PLEKHA6 coding upstream 214194 1740599 ~ 1784676 (+)
CI01000058_01625351_01664692 PIK3C2B coding upstream 333076 1625351 ~ 1665794 (+)
CI01000058_01580247_01591754 NA coding upstream 406617 1579663 ~ 1592253 (+)
CI01000058_02028188_02037502 MDM4 coding downstream 24982 2028149 ~ 2037628 (+)
CI01000058_02052152_02085378 NA coding downstream 48796 2051963 ~ 2085455 (+)
CI01000058_02227590_02229507 MYOG coding downstream 224251 2227418 ~ 2230021 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 345448 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 375417 2378584 ~ 2392780 (+)
G247950 NA non-coding upstream 57602 1927222 ~ 1941268 (+)
G247977 NA non-coding upstream 71838 1881180 ~ 1927032 (+)
G248152 NA non-coding upstream 121688 1876979 ~ 1877182 (+)
G248140 NA non-coding upstream 138890 1859734 ~ 1859980 (+)
G248139 NA non-coding upstream 140804 1857684 ~ 1858066 (+)
G247969 NA non-coding downstream 130 2003297 ~ 2056291 (+)
G248173 NA non-coding downstream 39004 2042171 ~ 2280818 (+)
G248208 NA non-coding downstream 87090 2090257 ~ 2092730 (+)
G248303 NA non-coding downstream 233743 2236910 ~ 2237958 (+)
G247940 NA other upstream 542423 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 710600 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1401699 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1543126 434913 ~ 455744 (+)
G250039 NA other downstream 2691241 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2823209 4864571 ~ 4888216 (+)

Expression


Co-expression Network