G248173


Basic Information

Item Value
gene id G248173
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2042171 ~ 2280818 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281681
CTGTAATTAAATTACTTATCCACTGAAAAAGTAAAGTAAGGGATTACTGTTCATTTTTAGGTAATTTACAGTTATTTATAATGTACTTGCGTTACATACTGTAAATTAGTTCAACAGTTCTGTATAAATCAATATTGAATTTTAAAATCTAAATTTGTCGTCTAAAGGTAAAAGTGAACGCTGCCTCTTTAAAATCGTTAGCTGTAGTGCGGTTGCGCGTGAGTTCGCAACTTGTGTAGTCGCTGTCTGAAGATGTCGGCAGAAGCGAGTGGCTGTTTTTCTGAATGGAAATATTCCAATTACTTCACTTTTTTGACACAGGTAGGCAAGAACATTACGGTAAAATGTAAGCTATATATGTCCTAGGGAGAAAAAACTGCGTGCGCGCTCTGAGAGACGTTCTTCAGTCAGTGCGCTCTCGACCAAAGCGCACACACATAGCCGCCTCTAGCGAGTGTCAGATTTTCGCGATTTATTACACATTTAAACGTTCAAATACACACACAGTTATGTCAAAATGCCCGTCTTGGCGTATATTCGCGTTGCTATTTGAATGTTAACAGCATATGTAACAGCATATTGTCTTCGTCCATTAGGTCTTAGTGACAGCAGCCTTTAAAACATGCTACTGTCTACCATTGGCTGTCTGTATAATAAATGATAATCAAACAACAAAAGAAAAGCTTTAATAAGGATTAATCTATATTTAATTTATACAGTTATGACTATGCAGATTTATTTTATATTTGATTATTCAATTTCTGTGGTATTTTTACTTACTACTGTTAGACCTACCTGGAAAAAAATATATAGCATTGTTTTATTTGTATTTTTATATATTTTTACCGTGGTATCGACTTTGGTATCGAGTATTGTGCACTTTTGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281681 True 889 lncRNA 0.35 2 2042171 2280818

Neighbor

gene id symbol gene type direction distance location
CI01000058_02028188_02037502 MDM4 coding upstream 4543 2028149 ~ 2037628 (+)
CI01000058_01957358_02009847 ATP2B4 coding upstream 32324 1957358 ~ 2009847 (+)
CI01000058_01838039_01842964 NA coding upstream 198941 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 241750 1794468 ~ 1800421 (+)
CI01000058_01740599_01784355 PLEKHA6 coding upstream 257495 1740599 ~ 1784676 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 67797 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 97766 2378584 ~ 2392780 (+)
CI01000058_02578534_02589495 NA coding downstream 297243 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 310375 2591193 ~ 2601755 (+)
CI01000058_02629861_02631891 NA coding downstream 348872 2629690 ~ 2632294 (+)
G247991 NA non-coding upstream 39004 1998870 ~ 2003167 (+)
G247950 NA non-coding upstream 100903 1927222 ~ 1941268 (+)
G247977 NA non-coding upstream 115139 1881180 ~ 1927032 (+)
G248152 NA non-coding upstream 164989 1876979 ~ 1877182 (+)
G248140 NA non-coding upstream 182191 1859734 ~ 1859980 (+)
G248356 NA non-coding downstream 36400 2317218 ~ 2321912 (+)
G248372 NA non-coding downstream 117868 2398686 ~ 2398891 (+)
G248373 NA non-coding downstream 119567 2400385 ~ 2400642 (+)
G248374 NA non-coding downstream 121045 2401863 ~ 2402123 (+)
G248384 NA non-coding downstream 135435 2416253 ~ 2416481 (+)
G247940 NA other upstream 585724 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 753901 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1445000 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1586427 434913 ~ 455744 (+)
G250039 NA other downstream 2413590 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2545558 4864571 ~ 4888216 (+)

Expression


Co-expression Network