G249186


Basic Information

Item Value
gene id G249186
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2315580 ~ 2321692 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282808
CTTAATTTGTGTTCCGAAGATTAACGAAGGTCTTACGAGTGTGGAACGGCATGAGGGTGAGTAATAAATTACATTATTTTTTTTGGGTGAACTAACCCTTTAACATTAATGTATTAACTAACATGATCTAACAATGAGCAAAACAATATTCAAAGTGCAAATAAAGACCAAATTTTTCTTCAAGCATGATACAGAGCTGAGAGATGATTACAACTACACAGCCCAGCCTAAGATAGCTTTCATATTGGGAGATATCTGCATGTATCAGGGAGCCGCTTTCAAAACTTTTTATTCAGCTGAATTAAATGGTTTTTATTTTTATAAAAAGCAAAACGACAGTGGAGGCGTAATGCAAATGTAGCGGTGGCATATTCTATCCTAATCTCACCCTCACACTGTGCCATGGCAATATCACTCACGGGACATCTTTTCACCTCGACGAGAAATCTCGTCACATTTTAATCTTGCGAGATCTCGTGGCACGAGATCTCATCACACCCCTACTGTTTACATAAACTGTTTGCTGGAAGCTAGTTATTTTAGAAAGATTTAAATATGGATATTTTTCTTACAAAAATGCATCTCTTCACTTCAGAAGGCCTTTATTAACTCCCTGGAGCCATGTGGATATATTTTATTATGGGTGGATGCACTTTTTTGGACTTCAAAATCAAGAGTGCAATTCACTACCATTATAAAGCTTGGAAGAGCCAGGATATATTTTATAATTAATATAATATATTTGATAACTCCGATTGTGTTTGTCTGAAAGAAGATACATCTAGGTCATATACATCTAGGATGGCTTGAGGGTATGTAAATCCTGGGATAATTTTCATTTTTGGGTGAACTTAAGTGTGGGCTCTGCGTTTAAAGTGTGGTCACATTAGTGAAATTCCATGAACAAAACGGTTCATTGTCTATTGAGGACCTATAGTGATGTATGAAGCACAACTCACACAGACATCACTTTCAATCTAGGCAGCTTTTTGTTGGTCAATATGGCAAACTCACATTACCAACAGAACCCGATGTGAAATCTGTGTGGGGAAATCTTTCACTCTCACATGAAATTCCAGATCAGATTCTTATTGAAATGACTGAATTCTACCTTCAAAGATTTGCAGAACAACAGAAAATGTGACTGCACCTTTACTGAATAAGTAGCATGAAAGCTTCAATGACTTGTGTGAAATGACTTAAGGCCCAGATATACGGCATTTTCTGCGTTCTGCTCCATCTCACACACAGTTGAGCACTTGAGCCTTTCAAAGGATACTCTAACGGTGAATGTCCACTGCAGTAACAACTGCAAAGTGTCCAATGTGTAAACAATATGATTTGCTTGAGCACTAAATCCGACACAATCTGCATATTTTTAAATGGTCAAGACAGATGTCAGCTGAACCTCAGAGCGATTCGCTGCAGCCTGCGTTTTTCGCTTGATATTTGCATAAAGTCAAGAACTACCCAAACTTTTGATGCTCTCGGCCATTCTCAACACTTTTCAAATCGAAAAACCAATTGAAATTGAAAAGAAATACTCTCTGCTTAATATAATCTCAAAAGAAAGATGCATTTCTCTCTAAAGGTGCGTCCACTGTACTGTGGAGATGCGAGGCAGCATCGTCAACGTCATCTTTGCAGCTGACACTGACTCAGAAAACACTAGTTTATTAATAAATAATTAAAATGTCTCCTTGCTATTTTTTTTTTTAAAACACATTCATAATCACTACTTTTGCCGGCTTTGCAGCAAGCTTTATGTGTGCGCTTGAGTGCGGAATAGGCTATATATTACGGCTATACATATTAAACACTTATTATGGTTTAGTATTCTCCTCAGTATATATTTATGTAATTCAGTTGATATAAACGTGCGATTAGTCAACTAATGGCTTAAATGAACGACTACTAGTCGACTAGAAAAATCTTTAGTCGGGGGCAGCCCTAGTATGAATTAAGGATAAATTATTCACAATTTAAAACTGAAGACTTCCCTTCATTTTCCCTTCAATTTGTTTTAATGTCGAAGTTGTTCGCCACCTGACAAATGTTGCTCTAAATCCTCCATGTTGCCCAATTAAATGGTTCAATACAGTCAGTTCTCTTTATGTCTCTTTTTCTTCCCTTCCTTCTCCAGATCTCTGTGACTAATGTTCTTTACCACACAACAGTAATCTCCATTGTCGGTGTAATGGACTCTTGTTGTGTATAAGTGATAGTGGGTGTGTATCGGTGTGCCAGACAGGGACGGGCTGTAATTAAAAATAAGGGGCATGTGTGGCACCACAGGCTGTTCTGGAATGGCCGTGGCTGTCTGGGCCAGCGCTCACTGGGACTCGATGACAGGGTCATGTCATTTGTGCCGCTTCTGGGAAATAGTGCAGGAGGTTATGACCAGGGGCGTTTTAGGAGGAGGTTTTGGCTGGGAATTCAAATGTAGGGCAAGTGAAGAGTCATTAAAATTGGAAGCAGTTGTTGGGTTTTGAAATAGCAAGGTGCATATATAGTCTAATGTTTTCTCTTGAGGAAAGCATTGTATTGTTTTGATGGAACAGATGAGCGCTGCCCTTATGTGCTATTTAAAGATTGTGACAAAGAGGGGGCTCGTCTATTTAAGTGTATGCAGTACGTAAACATGACCGCTATAGCTCACTTGTGTTTACATTGTATATATTGGTTACTGACCGTTTTACCATTCAGAAGTCATATTTGGTAACTCAAATATGCCCTGCCTCTTTGCTCTCTGCACATTTGTCTCTCTCTTTCCTTTTTTTTTTCTCAAATGGCTCGTGTCCAGGGGCCCTGAAAATCCTGTCTCCTTGGAAACAGCGAGATGTTGTGGCAGCTGAAGTCGACTTTACATCTCCCATCTACCCCAAGAGGTGTAAACAGTCAGCGAATTCCTTTCACAGATGCACACACGAGGAAACAACCTCACCAGATTTTAGGATTGATGGGTTTGTTTCATGCTAGATTCTTTGTCTCATTCTCCAGACAGGTACAAAATATTTGTTTGTCAGTAAAGTATAGTCAGTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCGTGCCGTTTTACACCCATAAGACCTTCGTTGATCTTCAGAACACAAATTAAGATATTTTTGTTTAAATCCGATGGCTCAGTGCCAAACTGCTGAAATCACGTGACTTTGGCGCTCCGAACTGCGGATTCGACACGCTGATTCATTTATGCTCCGAAGCTTCCTGAAACAGTGTTTTGAAATCGGCCATCACTATATAAGCCGTTATTTTGGGGGTTTTTTGGCGCACCAAAAATATTCTCGTCGCTTTATAATATTAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGATTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTCCCTATGTAGGCCTCACGGAGCCATCGGATTTAAACAAAAATATCTCAGTTTGCATTCCGAAGATTAACGAAGATCTTTCGGGTCTGGAACGGCATGAGCGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGTCACTGTTCAGTATTGACAAAATGTTTGAATTTGCACATGGACAAACATAAGTTGGACAAATGGACAAACTTAAACTATATATACTGTAAGTTTGAAACTACATGAAGGTGAGTAAATAAAATTGTACAGCATTTTATTTGTAAATGTTGAGTTTTAAGGCAGTTTTGCATTAAATAGGCAGAGTGAATTACATCATTCTCTTCATGTCATTGTCTGCCTCTTGATCCTCAGCCAAATTATGAGTGCATTTTTGGGACACGGTCACAGTGAATTTCTCGTAAACTATGAATGATATGGAAGAATATAGTTAAAGATCTGTGAAATGTTTGATTCACACTTCCTAAATTGAACGCTTAAACCCGGAGGGACTCATGAATTATTCAAACCGATTATTTATACTGTAAGACATTTTCCTTAAAGCTTTTTTACAGCTAATGCCAAGAGTGCATTGCATACTTTATGCACACGCTGTGTTTATAAATGTGTCATTTTAACCCTGTTAGCCTAAGGGCTCAATCGTACATTTACATACAAACTGGAAATAGCAAATAAGGGACCATCTTGTTTGGATCTGTCAGTCAATGAGACATACTACAATTATTAGTATGCAGTAGTATGTTATGTAACACCTGTTCTTTAAGTAGGATTAGTTTTTCATCATCCTATATGGGTACTGGATCAATTCTGTTTTTATAGCTGTCCTGTCTTGACTGATATAGTCAGTCGTGCATGAGTGGGGTGTGGTGTCTCTAGTTTCAGACACAAAGAGACAACACTGTCTGCCAACTACAGTGCCTTGCCAGCCCAGTAGGGGGTGACTCAGGGTTGGCACGTGCTCCAACCACACCTCTATTGCTCGTACACAGAGGAGAGAGTTGTTGTTTTGACATTTTGCCAGTGGATATTAGATCTGTTTGCAGCTTATGAGGTGGTGTTTGAAGTTGCTGCTCATTGATATTCCAAGAACAGCTTTTGTAGCTCCATTTGTGTTACTTATGTTGGGACTTTACAAAGTAAAAATGCCCCAGATTGAGGCCGACAGAGGGAAATTTTTCTTCCAGCCTTGAGATGAAGACAACGTGGTACATAGTATTAAAAAAAAAAAAAAGGAAAAAAGTGCTAAACTTCTCCAGAAGCATTACATCATACTAATGCTAATCCACAGTCTGGCTGAGTACCGTGTCTCTTCATTATTCATGGAGTGACTGCACAGAGGCGCTAGAGCTGTTCATGGGCTGTGCTGTCAGTATCATGAGCTACACCAATCCTGGGCCAAAAATACCATCCAGATGCCTCGGTTAAGACCTTGAGATTAGAAAGAAGCACACATTTATGATATAGTCTTAAAGATGAAATTCAAAGGAATGTCCATGTCTGTTCTGTAATAGAGAAATTTTAAGTTCATTGTCATCATTTTTAATTGCACAAGGATAGCATTTGCATATTACATATTATTTTAATTATTTGCTCTCAGTCTGTTTGCCTCAATGGGTTAAAGTGAATCTGAAATAAAGCTTATTTAATCCTATCTAAACCTATTTCATTTCTAAATGCACATTCTTGGTCTTGGTTGATATCGGATATTTATTTGCGTATTCTCATTTCCCCTATTTTTACGTCATCTAACACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282808 True 5217 lncRNA 0.38 2 2315580 2321692

Neighbor

gene id symbol gene type direction distance location
CI01000058_02207230_02214219 NA coding downstream 101361 2206269 ~ 2214219 (-)
CI01000058_02198525_02205429 NA coding downstream 110143 2198496 ~ 2205437 (-)
CI01000058_02192060_02196086 NA coding downstream 119494 2191796 ~ 2196086 (-)
CI01000058_02100559_02106600 NA coding downstream 208928 2100018 ~ 2106652 (-)
CI01000058_02049299_02051461 LRRN2 coding downstream 263771 2049289 ~ 2051809 (-)
CI01000058_02366247_02370447 NA coding upstream 44534 2364878 ~ 2370756 (-)
CI01000058_02463470_02484038 MDFI coding upstream 140613 2462305 ~ 2484038 (-)
CI01000058_02507677_02545533 FOXP4 coding upstream 185902 2507594 ~ 2546413 (-)
CI01000058_02548351_02550351 NA coding upstream 226318 2548010 ~ 2550548 (-)
CI01000058_02558119_02571796 NA coding upstream 236336 2558028 ~ 2573230 (-)
G249183 NA non-coding downstream 6575 2297565 ~ 2309005 (-)
G248999 NA non-coding downstream 228427 2071732 ~ 2087153 (-)
G248979 NA non-coding downstream 276440 1982037 ~ 2039140 (-)
G249003 NA non-coding downstream 316878 1995005 ~ 1998702 (-)
G248994 NA non-coding downstream 330195 1984163 ~ 1985385 (-)
CI01000058_02235326_02347093 PPFIA4 non-coding upstream 117 2235326 ~ 2347799 (-)
G249213 NA non-coding upstream 41689 2363381 ~ 2364654 (-)
G249222 NA non-coding upstream 88308 2410000 ~ 2410334 (-)
G249237 NA non-coding upstream 110171 2431863 ~ 2432081 (-)
G247592 NA other downstream 1660631 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 536791 2858483 ~ 2861491 (-)
G250230 NA other upstream 1366951 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G217330 NA non-coding NC_053133.1 CM020930.1 1354225 ~ 1354503 (-)