G249029


Basic Information

Item Value
gene id G249029
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2626274 ~ 2628453 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282630
TCTAAAGAGATTCTCATGTTCTGTCCGGGGTCTGCCTCTAGTTTGATGATGGTCTTTAACCCTAATGAAATTCCGTACATTTTCTACATTCTGATTTGCCCCATTTCTGAACTTTTCCCATGGTTCTGTCTCCTGGCCGCACCACCATGTGACTGTCCATCGCAGACTGTAATTCCTTTTTTTTCCCTTTCAGCTGCTTTGTTCAAAAGGTAACAATCGGTGTAGATGTTAATCCGTGAAAAGTCAGTCTCTGTAAGGGCCACGAGACGCCTTGAGACAGAGAGCGTCTCAAAGGCTACCTAAACTTTTGTTCCTCCCTTCCTCCTCTCATGGGAAAGAACTGAACAAGCACAAAGGATTACAAGCCTTATTTGAGTGGTGTAACATTCGGAAACTAAATTTTTTAAATTGAGCTTTCAGTATGCACTTTCATGGAATAAATCCAATGGCTTTTTGACAAATCATGAACTTTTGCGCACAGGTTTTGTGCACAAATATGACGCCAGGTCTAGATCTGTGTTACACACACACATACGCATCTAGGATCATACATCGACCCATGGTAATGTGGAATGCGTGTTCGCATGGCATGTCATCGCGCTAAATGTTAGTCAGTTCAAAGGTGAGAAGCTTTGCTCCATATCCCAACCATGTGCAGACTGGCTAGAACACGATCCCCGGCTTCTCCTCCATCTGCCTGGCCGGTTTCATCTTACACGGGTAAATTACACTCAATCACTGTAATTGCATCCTACACAACATGTGCCTTTGTGTCAAATTTTCGAGCAGACCCTTCTCTGCCCGCCTTGGGGAAGCGGTTGAAATGATGTCAACGTTCTGGGCTATTTTATGTCTGTTTTGATTAAGCTGAACAAAATCCAAGTGTTTTTCCTGGTTGTTTTCTACATTTAAGGGAAGGAAAAACTTAAGTGCAGCTAGTGGGTGTGTGTTTGTGTGTATTAGGGGGTTTAAGAAAGACCATGTGGAGGAGTTGCTGAATATTTATATGGTTTGCTTATGTGTTACGGTAAGTGTTGGTGGTTTGCCTCAGCGGTGTGGACATTTTCAAAATCAATGTGATAAACCCCTCTTGATCTGTTAAGGAAATGTTTAAAGTCAGTCTGGTTTAAAGATGTGACTTGTGCAAGAGAATAAAAAAAAAAATGGGTCAGTGACGTGACTGGTCATTTCTTTTCCAAAGGCTTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAACAAAGAAAAGACATTCAATGTAAGGTAGTACAACTTGATCTCTTTTATTGAGTCCAAAAGGTTGTAATAATATTTTGCTTCATATAAAGGTATTTTAAAGATTTTGAAGTGTCAAAAGGGATTCGGTTTAACTGTCCAAAGGTCATTCGGTTTAACTGTCCAAAGGCCAATACAGCCATTTAATTTGTTATTAAAATATCTTAAAATGTAATAAATATATATATTTTGTATTCTGGCATGATTTTATAACATCATATATCAACATAGTGCAAAATGGTATTAAAATTATGTGTCATTGCTTTGTTATGAGAAAGAATGTCCAGAAAAATGAAATTCATTGATGTCATTCGGAGTAACCAATATAAAAGGACCATTTTGGATCAAGTCATGCGGTCAATATCATGTGACAGGATGTGGCATCATTTAGACACCTGCAAAGGACAACACAGTTGTGATGGAAAGTAACTAACTCTCTTTTAACTATTTGAAAAATTCATGTTTTCACTTGCTCATACGCATGTCACGAAATATCAGGTCATTCGATACAACTGCTATAAAACATGGAAAATGTAGTTTTAAAAACTTGTACTAAATATAAAATGTTTGATTGTCCTTTTGCTTGCTAGCTAGCTATCAGCCTGTTAGCATTGTTTGAAAATATCGTCATTTGGTAAAACCGAATTTTTTTTATCTTGTGATAAATGACAAAAGCAGTGTTAATTGATTATAAAAACCACATATCTCATTGTTAACACTTAATAAAACTTCAAAATTAATTATATCTCCATTAAATTTTGACACTTTTAAAAACCTTATTCGTCAATGACCCATATATACAGTATGTGTGTGTGTGTATGTATATATATATATATATATGTATATATGTATGTGTATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU282630 True 2154 lncRNA 0.36 2 2626274 2628453

Neighbor

gene id symbol gene type direction distance location
CI01000058_02558119_02571796 NA coding downstream 53044 2558028 ~ 2573230 (-)
CI01000058_02548351_02550351 NA coding downstream 75726 2548010 ~ 2550548 (-)
CI01000058_02507677_02545533 FOXP4 coding downstream 79861 2507594 ~ 2546413 (-)
CI01000058_02463470_02484038 MDFI coding downstream 142236 2462305 ~ 2484038 (-)
CI01000058_02366247_02370447 NA coding downstream 255518 2364878 ~ 2370756 (-)
CI01000058_02859435_02860658 FAM72A coding upstream 230770 2858483 ~ 2861491 (-)
CI01000058_02863488_02874502 NA coding upstream 234804 2863257 ~ 2874660 (-)
CI01000058_03112748_03117231 IL10 coding upstream 483779 3112232 ~ 3117231 (-)
CI01000058_03128328_03131680 NA coding upstream 499822 3128275 ~ 3131862 (-)
CI01000058_03136045_03137264 PRELP coding upstream 507246 3135699 ~ 3137264 (-)
G249028 NA non-coding downstream 171070 2454798 ~ 2455204 (-)
G249248 NA non-coding downstream 181163 2444792 ~ 2445111 (-)
G249238 NA non-coding downstream 193613 2432448 ~ 2432661 (-)
G249237 NA non-coding downstream 194193 2431863 ~ 2432081 (-)
G249222 NA non-coding downstream 215940 2410000 ~ 2410334 (-)
G249277 NA non-coding upstream 2707 2631160 ~ 2638355 (-)
G249287 NA non-coding upstream 35456 2663909 ~ 2664147 (-)
G249294 NA non-coding upstream 44950 2673403 ~ 2673652 (-)
G249296 NA non-coding upstream 48597 2677050 ~ 2677266 (-)
G249300 NA non-coding upstream 63973 2692426 ~ 2692673 (-)
G247592 NA other downstream 1971325 646443 ~ 654949 (-)
G250230 NA other upstream 1060190 3688643 ~ 3696711 (-)

Expression


Co-expression Network