G248613


Basic Information

Item Value
gene id G248613
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3107773 ~ 3108154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282149
CAAAATCCGCTTTCCACCGTCGGGCCGAACGGATGAATGGTAAGGAACGGTTTCAGTTGTATTTCCAACTGAGCCCGGTACGGCACGGAACGATTACAAACCGTTCTCCGCCCGTAATTAGCCAACCCTGCCGAACCGTACTGCTGGAATGCGAGTAGGGACGTGACGTCGTCACTCAGGATCGGTCACTTGTCTGTTGTTTGGCTGCCAGTTTCTCCGTAGCTTGCTAAACATGATATTTGAGCAACATGAACACAAATTAATCACACAATTAAAAGAAATAACTGATCATTCTACATAACGCGGCCACTATTTACATCGCATATCGTGTGTAAACTCTTGCGTTACTAAGGCAACGACTGAAAAGCTCCGTTATCAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282149 True 382 lncRNA 0.47 1 3107773 3108154

Neighbor

gene id symbol gene type direction distance location
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 6199 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 69429 3034418 ~ 3038344 (+)
CI01000058_02979997_03027744 RASSF5 coding upstream 79629 2979997 ~ 3028144 (+)
CI01000058_02964886_02978501 IKBKE coding upstream 128878 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 149205 2911431 ~ 2958568 (+)
CI01000058_03169524_03172961 FMODA coding downstream 60891 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 73266 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 92828 3200982 ~ 3220724 (+)
CI01000058_03503653_03506062 NA coding downstream 395224 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 536117 3644271 ~ 3645229 (+)
G248594 NA non-coding upstream 142950 2964493 ~ 2964823 (+)
G248566 NA non-coding upstream 199576 2891351 ~ 2908197 (+)
G248574 NA non-coding upstream 228985 2867222 ~ 2878788 (+)
G248519 NA non-coding upstream 422139 2685275 ~ 2685634 (+)
G248516 NA non-coding upstream 434111 2673375 ~ 2673662 (+)
G248614 NA non-coding downstream 855 3109009 ~ 3109249 (+)
G248568 NA non-coding downstream 3630 3111784 ~ 3114371 (+)
G248618 NA non-coding downstream 10914 3119068 ~ 3119298 (+)
G248560 NA non-coding downstream 28144 3136298 ~ 3141022 (+)
G248575 NA non-coding downstream 41791 3149945 ~ 3150383 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1310041 1794468 ~ 1800421 (+)
G247940 NA other upstream 1651326 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1819503 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2510602 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2652029 434913 ~ 455744 (+)
G250039 NA other downstream 1586254 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1718222 4864571 ~ 4888216 (+)

Expression


Co-expression Network