G248568


Basic Information

Item Value
gene id G248568
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3111784 ~ 3114371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282104
CGCTCTGTCACAACTGAAACTAGCGTCTCGTTCCCATACTGTTTTGCTTACTCAGTAAGCGGCTGCAACTTTTAAAGTTCCACGGCCCATGTTAGCAGTTTACATAGTTAATCTCTTTAGGGTGAGACATGCATCGCTGCAATTACAGTAAAGGGCTGACTGCTAAGCTGCTGGTAACTGCTCTATTTAGGTCAGTTTTGAGGTTAGCACAGTCATGTTTTAACCCTTACTTGCTCTTTTTGACACACCCTGGAAATGATAGTGTTAAATGATAAGTGACTAGTTTAATGCTTTGTGATTTTAGAATGTTTATTTGGCTCGTTCTCGCAAAACTTGACACAGTCTTGGAAGTAAACAGAAGATCAGTATGAACTAATTTCAACATGAGGAAGACAACTAAACCACATTAACCAAAAAAGGAAATGTTTGCATTATTCAGTTGCAATAATTTATTCATAACACTCATAACAATTACTGGTAACAAATTAAATATAAGCATCAGAAATATGAAAAACACAGTTAAATAAATGTTTAAGCTCATAAAATAAAGAAATAAATAAAGTTGACAAAAAGACATAAATATCAGTGTTTACACAATATTTATATTACGCAATATTTACACGATAAGTTATTTCAACAAATTTCAACAACAAATTTTCAAGATAACCCTAGTCAATGTGACTTAAACAACATTTTATGGTTTTAGTTCAATGTAAAACATTGCCATTGTGACATTTTCCAGAACTCCAGAAACAGAAGGTAAAGAGGCTGGCATTGCAGTGCATCAGCAAGTAGTGTGATGGAATGATGATGTGCAAGCGATAAGTTAAAGGATGAAGTCCATTTGTGCCTTATCCTACAGTATGTGGTTGATCTGTCCATTATCCTTTCTTTGTTTTCAGAGTATTCAAACTCGACTCACGTCATCATGGCCAGCCATCATCCAATCCACAGCAACATCCTGTTAGTGCTTTTCTCTCTTTGATGCCAGATACTGTTCGATGTACTTAAAGAGCATATCAAGCTCTCCCATTGCTTTATAAACACCCTTTTCCTTCATCTAAAGAGAAAAAGATATTGTCAGCCTTTGGAATAGTTTTCAAACATAATTTGTTAATTTCAAGCAATTTTAGACTAGAAAATCATTTTGATCATTACTCTTATTAGCATTATATTGCTGTATAAGACTTACCTTTTCATATGAGTTCTTTATGGTGGCAAACTCAAAGGGATTTTTGCAAGAAAAGTATTTCCTCTGTAACATAGAGAGACGTGTGTGTTATTTCATGTAGTTTGCAATGTTAAAGACACCTTCTTTGCCTCACCATACCATTTCACAACAAGAACTAGGTATTTTGACTCACTCGCAACAGCTCTTGCTAATAAAAATCCACAAAGGCTTTCTTCATATGTGCACTATTACGACATCCTGAATATGCCTAAACTACGTTTGTTTTTTTAAAAAAAAAAACTATGTTCACCATCCTAACATTCACCTCAGCTCACATCCTAAATTTATCAACATCATTTTAATGAGGTATTCATGAGCAGAGTTCCATACTTAAAAACAACTTCTGCCTACACTGCCTACACTGATTTTCTGGTCAACCAGAAAGTTTTAAGGGTTGGGGTTGTGGTTGGTTTTAGCTGTGTTTGTCACCAGGATGGACAGATTTACTCTGAATGTGCAAGTAATTATATCAGTGAGATCAAATCTTTTCTCTTAAATCATCCTTTAAACTAATTTCATAAGGACCAAAAGGCGGACTTACGCATTTGACCATATCCCGCTTGAGATCTTGAAATATACTTCCAATGGAATCGATGGGCGTTTTGGGGTGCAAGTGGTTCTTCTGGACAGCTGTTGGCAGAATGGTCTCCAAGTAGAAGCGCAGGATCTCATTCATGACATGGCATCCATAAGGACTCTGTGGATCAGATATATGAGAACGGAGCTCCTTCAGCCTCACAGGAAAGCCCTCCACAAATGAGCAACATTCAGACTTGCAGTCAACTTTTTTGCACTGAGCACTTTCAGAAAGCAGAAGCATGACTAGAGCAGAAAAGATGACTCTAGAGAAAATCATTCTTCAGTTCTCTTTGTTCTTGGCTCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU282104 True 2116 lncRNA 0.36 2 3111784 3114371

Neighbor

gene id symbol gene type direction distance location
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 10210 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 73440 3034418 ~ 3038344 (+)
CI01000058_02979997_03027744 RASSF5 coding upstream 83640 2979997 ~ 3028144 (+)
CI01000058_02964886_02978501 IKBKE coding upstream 132889 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 153216 2911431 ~ 2958568 (+)
CI01000058_03169524_03172961 FMODA coding downstream 54674 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 67049 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 86611 3200982 ~ 3220724 (+)
CI01000058_03503653_03506062 NA coding downstream 389007 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 529900 3644271 ~ 3645229 (+)
G248614 NA non-coding upstream 2535 3109009 ~ 3109249 (+)
G248613 NA non-coding upstream 3630 3107773 ~ 3108154 (+)
G248594 NA non-coding upstream 146961 2964493 ~ 2964823 (+)
G248566 NA non-coding upstream 203587 2891351 ~ 2908197 (+)
G248574 NA non-coding upstream 232996 2867222 ~ 2878788 (+)
G248618 NA non-coding downstream 4697 3119068 ~ 3119298 (+)
G248560 NA non-coding downstream 21927 3136298 ~ 3141022 (+)
G248575 NA non-coding downstream 35574 3149945 ~ 3150383 (+)
G248622 NA non-coding downstream 36879 3151250 ~ 3151831 (+)
G248623 NA non-coding downstream 48242 3162613 ~ 3162861 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1314052 1794468 ~ 1800421 (+)
G247940 NA other upstream 1655337 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1823514 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2514613 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2656040 434913 ~ 455744 (+)
G250039 NA other downstream 1580037 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1712005 4864571 ~ 4888216 (+)

Expression


Co-expression Network