G248618


Basic Information

Item Value
gene id G248618
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3119068 ~ 3119298 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282154
CTTCATTCAGCTTCACAACACAAATTAAGATATTTTTGATGAAATTCGAGAGCTTTCTGAGCCCCCCCATAGCCTACAATGTTATTACCCCTTTCAAGGCCCAGAAAAGTAGTAAAGACATTGTTAAAATAGTCCATGTGACTATTTTATGTGACTACAGTGGTTCAGTCGGTGACAGTACTTTTTGTGCGCAAAAAACAAAACAGAATAACGACTTTATTCAACAATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282154 True 231 lncRNA 0.36 1 3119068 3119298

Neighbor

gene id symbol gene type direction distance location
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 17494 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 80724 3034418 ~ 3038344 (+)
CI01000058_02979997_03027744 RASSF5 coding upstream 90924 2979997 ~ 3028144 (+)
CI01000058_02964886_02978501 IKBKE coding upstream 140173 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 160500 2911431 ~ 2958568 (+)
CI01000058_03169524_03172961 FMODA coding downstream 49747 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 62122 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 81684 3200982 ~ 3220724 (+)
CI01000058_03503653_03506062 NA coding downstream 384080 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 524973 3644271 ~ 3645229 (+)
G248568 NA non-coding upstream 4697 3111784 ~ 3114371 (+)
G248614 NA non-coding upstream 9819 3109009 ~ 3109249 (+)
G248613 NA non-coding upstream 10914 3107773 ~ 3108154 (+)
G248594 NA non-coding upstream 154245 2964493 ~ 2964823 (+)
G248566 NA non-coding upstream 210871 2891351 ~ 2908197 (+)
G248560 NA non-coding downstream 17000 3136298 ~ 3141022 (+)
G248575 NA non-coding downstream 30647 3149945 ~ 3150383 (+)
G248622 NA non-coding downstream 31952 3151250 ~ 3151831 (+)
G248623 NA non-coding downstream 43315 3162613 ~ 3162861 (+)
G248624 NA non-coding downstream 43791 3163089 ~ 3163442 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1321336 1794468 ~ 1800421 (+)
G247940 NA other upstream 1662621 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1830798 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2521897 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2663324 434913 ~ 455744 (+)
G250039 NA other downstream 1575110 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1707078 4864571 ~ 4888216 (+)

Expression


Co-expression Network