G248575


Basic Information

Item Value
gene id G248575
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3149945 ~ 3150383 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU282111
GAACACCTTCATCCATCATGTCCCTCACTGCTGCTCTTCTCAATGGGGACATCGTTGATCCAAAGGATGAGGAAGATGATGATGATGGACCCCTGAACCCCACAACCTTGAAGCAAGAGTGGGAGAAGATGTGCAGGACAATCTGGCTGCTGCTGTGTCTGCTGCAAACATTCATGTGCTCTCCATCAGCATGACTTTATTACTTTTGTGGTGTGGTGGGCTAAACCACTGAGCCGGTCAGCAGAAGGTTGCTGGTTCAATCTCTGCAGCATCACCTCCAGTGTGTCCTTGATCAAGTCACTTGGAAGGAGGAGTGATGGAGGGTCTCNNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282111 True 333 lncRNA 0.50 2 3149945 3150383

Neighbor

gene id symbol gene type direction distance location
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 48371 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 111601 3034418 ~ 3038344 (+)
CI01000058_02979997_03027744 RASSF5 coding upstream 121801 2979997 ~ 3028144 (+)
CI01000058_02964886_02978501 IKBKE coding upstream 171050 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 191377 2911431 ~ 2958568 (+)
CI01000058_03169524_03172961 FMODA coding downstream 18662 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 31037 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 50599 3200982 ~ 3220724 (+)
CI01000058_03503653_03506062 NA coding downstream 352995 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 493888 3644271 ~ 3645229 (+)
G248560 NA non-coding upstream 8923 3136298 ~ 3141022 (+)
G248618 NA non-coding upstream 30647 3119068 ~ 3119298 (+)
G248568 NA non-coding upstream 35574 3111784 ~ 3114371 (+)
G248614 NA non-coding upstream 40696 3109009 ~ 3109249 (+)
G248613 NA non-coding upstream 41791 3107773 ~ 3108154 (+)
G248622 NA non-coding downstream 867 3151250 ~ 3151831 (+)
G248623 NA non-coding downstream 12230 3162613 ~ 3162861 (+)
G248624 NA non-coding downstream 12706 3163089 ~ 3163442 (+)
G248625 NA non-coding downstream 13392 3163775 ~ 3164114 (+)
G248634 NA non-coding downstream 76344 3226727 ~ 3226953 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1352213 1794468 ~ 1800421 (+)
G247940 NA other upstream 1693498 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1861675 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2552774 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2694201 434913 ~ 455744 (+)
G250039 NA other downstream 1544025 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1675993 4864571 ~ 4888216 (+)

Expression


Co-expression Network