Gene
RNA
| Item | Value |
|---|---|
| gene id | G248622 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000058 |
| NCBI id | null |
| chromosome length | 5213219 |
| location | 3151250 ~ 3151831 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU282172 | False | 582 | lncRNA | 0.43 | 1 | 3151250 | 3151831 |
| TU282173 | False | 552 | lncRNA | 0.43 | 1 | 3151280 | 3151831 |
| TU282175 | False | 462 | lncRNA | 0.44 | 1 | 3151370 | 3151831 |
| TU282171 | True | 395 | lncRNA | 0.47 | 1 | 3151437 | 3151831 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000058_03066079_03101574 | MAPKAPK2.S, MAPKAPK2, MAPKAPK2A | coding | upstream | 49676 | 3066079 ~ 3101574 (+) |
| CI01000058_03034418_03038200 | DYRK3 | coding | upstream | 112906 | 3034418 ~ 3038344 (+) |
| CI01000058_02979997_03027744 | RASSF5 | coding | upstream | 123106 | 2979997 ~ 3028144 (+) |
| CI01000058_02964886_02978501 | IKBKE | coding | upstream | 172355 | 2964886 ~ 2978895 (+) |
| CI01000058_02911431_02958568 | SRGAP2 | coding | upstream | 192682 | 2911431 ~ 2958568 (+) |
| CI01000058_03169524_03172961 | FMODA | coding | downstream | 17214 | 3169045 ~ 3173702 (+) |
| CI01000058_03181624_03193630 | SLC6A14 | coding | downstream | 29589 | 3181420 ~ 3195924 (+) |
| CI01000058_03201861_03220295 | TAF4A, TAF4 | coding | downstream | 49151 | 3200982 ~ 3220724 (+) |
| CI01000058_03503653_03506062 | NA | coding | downstream | 351547 | 3503378 ~ 3506296 (+) |
| CI01000058_03644271_03645229 | NA | coding | downstream | 492440 | 3644271 ~ 3645229 (+) |
| G248575 | NA | non-coding | upstream | 867 | 3149945 ~ 3150383 (+) |
| G248560 | NA | non-coding | upstream | 10228 | 3136298 ~ 3141022 (+) |
| G248618 | NA | non-coding | upstream | 31952 | 3119068 ~ 3119298 (+) |
| G248568 | NA | non-coding | upstream | 36879 | 3111784 ~ 3114371 (+) |
| G248614 | NA | non-coding | upstream | 42001 | 3109009 ~ 3109249 (+) |
| G248623 | NA | non-coding | downstream | 10782 | 3162613 ~ 3162861 (+) |
| G248624 | NA | non-coding | downstream | 11258 | 3163089 ~ 3163442 (+) |
| G248625 | NA | non-coding | downstream | 11944 | 3163775 ~ 3164114 (+) |
| G248634 | NA | non-coding | downstream | 74896 | 3226727 ~ 3226953 (+) |
| G248636 | NA | non-coding | downstream | 75630 | 3227461 ~ 3227736 (+) |
| CI01000058_01794468_01800421 | KISS1 | other | upstream | 1353518 | 1794468 ~ 1800421 (+) |
| G247940 | NA | other | upstream | 1694803 | 1452997 ~ 1456447 (+) |
| CI01000058_01280337_01289153 | DNASE2B | other | upstream | 1862980 | 1278592 ~ 1289874 (+) |
| CI01000058_00592498_00596709 | NA | other | upstream | 2554079 | 592331 ~ 597171 (+) |
| CI01000058_00435196_00437830 | AGTRAP | other | upstream | 2695506 | 434913 ~ 455744 (+) |
| G250039 | NA | other | downstream | 1542577 | 4694408 ~ 4697161 (+) |
| CI01000058_04864571_04888198 | NA | other | downstream | 1674545 | 4864571 ~ 4888216 (+) |
