G250259


Basic Information

Item Value
gene id G250259
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3653681 ~ 3653990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU284019
AGTGAAAGGTTATCATTTGCACGTGTTTTGTCTTGCTAGTTTACACATTAAATAGATATAAAACCATTCCAGCGCTAGAAGAGGCAAAAGAGGGTTTAATTCGGTATCGCACGCCACGTTGTTATCGGTGCCCACAGACGCACATACATACAAGGCTCGCGCGCGCACACACAGAGAGAGAGAGAGGCGCGTTACAGATAGCTCGCAAACTCCAAATTGATATCTCTTTCGCGTCCTAAATGCACTTAGATGGACACATAAACGCATTATGTCAGTCAAAATACCCCTCTCGGCAAGTATTCTCGTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU284019 True 310 lncRNA 0.45 1 3653681 3653990

Neighbor

gene id symbol gene type direction distance location
CI01000058_03239666_03330001 CDH4 coding downstream 323680 3239666 ~ 3330003 (-)
CI01000058_03154548_03160071 NA coding downstream 493610 3154539 ~ 3160071 (-)
CI01000058_03136045_03137264 PRELP coding downstream 516417 3135699 ~ 3137264 (-)
CI01000058_03128328_03131680 NA coding downstream 521819 3128275 ~ 3131862 (-)
CI01000058_03112748_03117231 IL10 coding downstream 536450 3112232 ~ 3117231 (-)
CI01000058_03668662_03671701 FEZF2 coding upstream 14556 3668546 ~ 3672185 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding upstream 30471 3684461 ~ 3827727 (-)
CI01000058_03904018_03906800 THOC7 coding upstream 249907 3903897 ~ 3908108 (-)
CI01000058_03950901_03956376 PSMD6 coding upstream 296911 3950901 ~ 3956376 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 322874 3976864 ~ 3991942 (-)
G250225 NA non-coding downstream 13775 3639173 ~ 3639906 (-)
G250257 NA non-coding downstream 16584 3636813 ~ 3637097 (-)
G250251 NA non-coding downstream 45847 3607612 ~ 3607834 (-)
G250250 NA non-coding downstream 48197 3605273 ~ 3605484 (-)
G250242 NA non-coding downstream 83257 3570209 ~ 3570424 (-)
G250260 NA non-coding upstream 72 3654062 ~ 3654576 (-)
G250268 NA non-coding upstream 19746 3673736 ~ 3673966 (-)
G250238 NA non-coding upstream 140654 3794644 ~ 3879551 (-)
G250231 NA non-coding upstream 181067 3835057 ~ 3838932 (-)
CI01000058_02859435_02860658 FAM72A other downstream 792488 2858483 ~ 2861491 (-)
G247592 NA other downstream 2998732 646443 ~ 654949 (-)
G250230 NA other upstream 34653 3688643 ~ 3696711 (-)

Expression


Co-expression Network