G250230


Basic Information

Item Value
gene id G250230
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3688643 ~ 3696711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283989
CTTACGGGTGTGGAACGACATGCAGGTGAGTAATTAATGACAGGAATTGAATTTTTGGGTGAACTAACCTTTTAAGGTTCTTGTTAAATGCCTGTTTTGCTGAATCAAAATGAATCATATTGGTGTTGATTTTGGTTCATCTTTGCAGGTTTAGTCAGACTAGCTGATTTAGTTATTGTACAATGAAAATGCCATATACTTTTGTTTGGATTGCTTTCCAATCACCACAAAGGCCTTTTTCTTTATCGTTCATGCTGTATTGTGGTTTCTCATTTTTTGTGTGTGTGTCTGAATCAGCCAAAATGTGGCTTTCACTTGTTGTTTTGGCTCCAGTAGTCAGAATATTCCTGATGGCCTCCTCCCCTTTTACACTTTTTCATTTTTTGATTGTTTTAAGTAATCCGCTTTGAAATGATCTGTTAGGTGGGTGTAGTATAATTGCTTGGTGGTTCTTGGCTGGTTGTCATATTGAAGTATATGTGGCCCACGCTAAGCTTGGGTTAATTGGGGTCAAGGATGCTGATTTCTCACAGACAGAGATGGCACATTGGCCAGAGTAAGAAGATTATATTTGCTGTTTGACTAATTCAAAATATGGCTGCTTTCATAACGGCGTTTCATAATGCAGAAAAAGTGACCATATGGGAATAGGTATTAAAAATGAAAACAAAGAAAAATGGATGAAATTCAGTCAAATGATATGCATAAAAAGGATGGAGAGTAAAATAATACTAGTAATTATTAGGTATCATGAAGAGGCTTGTTGATAATTTTTTGTTATTATTATTGTTGTTATTTATTTGATATAAGAATGGATTAAATTTTAAAGCATTTCTCAGTTTGAAATTTTTAAGATAAATTGATATTAATTAAACTATTAATTAAATATTAATTAAAATACATCAGTGATTTAATATATCCTTAATTTGGAAGCATTTAAATTCATTTCAGTAGTCAAATTTACTTGCAAGTGGTTTGTTGCGACAATAATATTATAATATTCATAAGTTCTGAGAAGATGGTGATTTTTAGGAAGGTCATATTCCAGATACAAGCTTGCCAAATCGCTTGCCAGTGGACGGATGAAGTTTGTCAAGTTCAGCATAGAGGACCAGAGAGAGGGATAGAAAGGGAGAGGGGTGGGGGGAGAGAAAATTAATTTATTTTACTCTGCCAGCCTGCCAGTTCTTGAAAGAACAGCTGAGGAGAGCAGGATTAAGGCAGCTGTGCTTAACGTAAGGGCTCATCTGTCAGATTGGGGCGGAGCGCATAGATCATTGATTAAAAAAAGCCATCTCCAAATCCAGCGCTTCACTGATACTCTTCAGTGTGTGCGTGCATATGCATGCGTGTCTGAGTGCCAGCAGAGAGACTCAGATACACAGCAGATTACACACGTCAATTATACACTTAATCTGCTTCTGGAGGAGATTGTGGCCTACCCTCATTGATTAATTTGAAGTATTCCCGTTGACCTTGGCAGTTATCAGATCGACAAGATTGCACTTTATGGTGACGGTTAATGCGGTTTAATCGTTCCACTGCTGGATACTGCGAGGAACAAGTAGGGTTACTCGGGATACTGGAAAGCCAGGCGGGTTTTGATTGAGCTGCTGCTTGTTGCATTTCGCAGACCTGCGATACCACTTCACTGTCTGGGACACTTAACCACTTTGCAGGTCCGGCTGACCCAAGTGAACAGTTTAATCAACTTTAGCTAGCGCGCAAACTTAATGCTGTGCATTCTATGGCCTAAGAAATACAGGAACAAAGTAGTCAAAATGAAGAAACTAGACAGTTTTAAAAAATGATAACTACTAATTTCTTTTTTTATTGTCTTTGAGCTTTTTTAAATTTAATTGCAATTTTCTGTTGTTGTTTTTTTTGTGTGTTTTATGTTTTTGCATTTGTCACAAAAACAAAAGCCAAAACATAAAACAATGTTGTGTTTTTTGTTTTGTTTTGTTTTGCTTTTTTTTTCTTTCTTTTGCTTTACTTTTTCATTTGTTTTGACGAACAAGCATGCAGAAAATTTTGGAATGTTATACACGTTTCCTTAGACAATTTTATTTTTATCCAGTTTCCCCCCTTCACTCCCTTTGTTTTGATTCTTGATTATGATATCCAGGACAACAACAATCAAAAATGTGTTTTTGTATTATGTATTTATGTATTTCATTCCAGCCTCCGATTGCATTTAGAAAATCATACGATATGGGAGGCGGATGCATGCTTTTTGTTTTTCTCCCCAGTTAATCCTTTTATTTTAGAGGTAAACCAATTGAAAAAGGAGCTTTAGATGAATAATCTGAACGCTAGTAGGTCAGTATGAAAAAAAAAGACTAAAAGGGACCCAACAGGTCCTTTCACAGATACTGTTCAAAACACATTAAAGGGGTTTGGCTCTTTTAAAATGCAGGGCAGATGTTAGCGGTTCAGGTTTCTGATAATTACGGAGGCCGAGGTGCTTTCTTTGTCGCTTACTGTGAACCGAGGCTAATTTAAATAAACCCGCAGCAACAACACTAACAGTTAGCGATTTTAGCAAAGTAAACGTACTGCAGCAGAAGTGTATTCGAGCGCCGTGGCTCTCGACTGGCTCTATTAGCCGTCTATTGGCTCTCTCTCCGTCTCTCGCTCTCCCCGTGACATATAAGTGAGGTATGGTGGCATTTGTTTGATTAACTTGTCTGACAAAAGTGACATCTGCTAGCGGGTTCATGTATACGAGAGGCTCAGCGCGGGTCCGCCTTTGTACATCTGTCAGCACAGAGGCAGGGGAAAAGGGTGAAAAGAAACAAATTGGTCCCAAAAAGCAGCCCATTCACCTTCTGCGCTCCCCCCTCCGCCCCCCTCCCACCCCTTAGCCATTCAGGTGCACCGCGGGGCTCTCAAGTGCTCGCTGGTTTATTCCATTTCGTTCCCCCCATTGAGGCCGAACCCCACAAGTGTTATGCTCCTCATTCCTGCTCGGCTCAATCCTCCCCTAAGCGTTCCTTTGTGAGCAGAATGGCTCACTTTGCCCTGGGACCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCGTTCCTTTTTTTATCCCTCACCCCTTTTTCTTCATTGTGTGTTTACTCAATGACACGATCACAGGCTGTAATTCCCGCCGTTTAGTTCATCTCGACGAGCTCCTTCTTTCAGAGCAAGTTTTTCTAAAGAAGGGCCCTGTTTGGACACTGTTGTGCACAAGCGCCGGTTTCAATAGCAGAAATGCATTCTCTGCAATTATACTTTTTGATCGGCTGATTCCTTTTGCACCCGCCCCTAAAAATCGCTCAACACACCGTTCCGTTTGGTAGGGTATTCCTTCGTTCGCAAACAAAAAACGCATTAGAGACACTTAAAAGTGTAGCAGAGCTTGCACAGAAACAGTAAAGGCTTGTTCCACTTAAGGATCCGGTGAGGCGTGCAAATCCAGAGCAGGGTTCTCTTTGTATCCACAACACAATCGTGAGCAGTTTGAAGCCCTTTTGCTTGCTGAGCCTGAAACTTTATTTTCAATCCCACCATTCAGAAGCACCTATTTCTGGAGAGAAAGAGTGAAAGAAAGAGAGAGAGCGCACTAACACAGCAGTGCGTCGGAGGACCGCGTTTAGGTTCGCGTATTTCCTACACAACATTTTTTCCATGAGGTCGTGGGGTCCTACGGCGGAGAGATAGTGAGCGCCGGGAGGCGTGGGGTCACCGGTGTGAGTTACCATGGTAATTGAGTTCAGTCATCAATGGACCTCCTCTCAGGAGGGATGAGGCGAACAATAACGGGCCGGTGGTGGCCGTGAACAGCAAGCAGGTAGGACTACCCCAGGCTTTTGTCCTAAGTGCATAATGTCTTGTAGTCAGATTTAAAGACTCCTCAGTCCCCAGGGCCTCCCTCTCTGGCCCGGCAAGGTGCCCGATTCTTTTGCATGGCCGGCGAGAAGGACAAGTGCCCTACGACCTGCTGGCCTGAGAGAGAGAGAGACGGCTCAATTAAGCGCAGACAAAGATGCAAAGAGTACCACAAGAAAGGTTGGAGGTTCGATTTTTGTGTGTTTTTTGTTTGGGGTATTCTCTCGCTTTTTGAATCGCAAGAAACAGAGAGGACAGGGAGCACGGGGAGGCACCGTGGAGTCGCTCTCGTTCTGTTTTCATCTCCACCGGCCTGTCGCTTTGCATTAACATCAGCGCTAGCAACCATCATCATTCCATCCCTACTGCTAATTGCAGACACAGCTGGGTCCCAGCAGGAGCGCTTCTCAAACAGCCTAGGCCTCTGAGAGCAGGCAGAGTGGCGCACACACATATTTGCAGAGCCACTACCACCAGCAAGGGCAGAAAGAGGCAGAGTCACAGGTTGCTTGTAATCCCCCATTACCCCCCACCGAGCCCCGCCCCCTCCTCGGCATTCCTGCTTTTGTAAGAGTGTGTTTTTTCTAATCCAAACTCAGCCCTTACCAGCTCTTTCTTCCTCCCAGTCCTCACGTAGGAGCCGCTAGCCCTCAGGTGTTTCAGGATTCGATAAAAGCGAGTCACGAGTGCGTGTGTATGTGTGCGTCTGCGACGGGGGTGGATGGATGTGCAACCTTACACTGAATTCTGTTTGTTGCCCCCCTGCTAGGCGCTATGGCTTCCTGTAACATGTCAAAGACGAGAGTGTGAACGCAAGCTTAGGAGCGCGGCTTGTGCATGTGCGTGGTGTGGCAGGGGCAGGAGGTCGCTCAGCCTTTCAGCGCTCCCCGCTAGAGGTGTGGGGGCCCTGCAGATGTTCATGTGTGTTGTATCGGTAACCATAACATACGCGTCCAACACACATGCGCGTGAACACGCAGCCCAAGCGCTTTCCAATATCAGATGGAACTCGTTAGATGATCACAGATTTTTTTTTTTTCTCTCCCATATCCGCTTCTTTCATTATGCATTCAGAGTCATGATACTCCTGTTTTGGCTAGCAGCTATTGCCAGCTTCCCGCTGCTCAATATCCAAAAAGTGCCACAGTACATAATATGCTCTCGGAGAGTCTTCTGTTTCTCTGCTGACAGCAGAACAATGTCCCACTGCCAGCACTGTTCATTTCACAACCAAGACCATAGAGGACATGGTCATACTGGACGAGTCTCTCACGATTTCGAAATATACATCTTTTTCGGCCTTGTATCATTTGATTTGTCATCTTATTTGGTGCTCACAACGGGGACTATAAAGTGGAAAACACCCAAATTATTATCCCCTAACTGTCAGTCCCCCCAAAATGACATTTCCATTTTAAAGTGTTTTAAATCTTGATTACAGACTTAAGTTTGGTCTCTTTTTAAAGAAGACACATGATATTAAAAGGTTAGTTCACCCAAAAATGAAAATTATCCCATAATTTACTCACCCTAAAGCCATCCTAGCTGTAATATTCTGGCTCTTCCAAGCTTTATAATGAGAGTGAATAGTAACCTAGATTTTGAAGCCCAAAAAAAGCGCATCCATCCATCTTAAAAGTAATCCATACAGCTCTAGGGGGTTAATAAAGGCCTTCTGAAGTGAAGCATTTTTGTAAGAAAAAAATATATATTTATAACTTTATAGACTATTATCACAAGCTTCCGGAAACGTCCGTCCATGCGTTCACGAGAGAGTTGAGTTCTGGCATATGACGTAGGATGTAGGAGTGGCGTAAGCTTAGGTGAGAGTAGACGCCTCTCGCGGTTCAAACAAATTGGGCTGGGCAACAAACTCAAGCTCCTCCAACATTTCTCTTTAAAACTTCTCATTTTAGACTTCTAATTTGTTACCAGTGTTTTGTTTTGCTCTTCTGCGCTTCCATGTTCGTCAATACGTCATGCGTCAGGTCAAAGTTCACTCTTCCGCCGGAATTGACTTGCATGCGGAAAGTAGTCGTTCTAGTTGATAAAGTTATAAATATGGATATTTTTCTTACAAAAACACATCACTTCGCTTCAGAAGGCCTTTATTAACCCCTTGGAGCCGTATGGATTACTTTTATGATGGATGGATGTGCTTTTTTGGGCTTCAAAATCTCTGTTACTATTCACTCTCATTATAAAGCTTGGAAGAGCCAGAATATTTTTTAATATAACTTTGATTGTGTGTGACTGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAAATATGGGATAATTTTCATTTTTGGGTGAACTAACCCTTTAAGTGAACTGATAGTTTGCTGGTAATGTGTTGGGGATAGTTCACCAAAAATGAAATTTTTATCATTTGCATATTATTCCAAACTTGTATGACCAACTTTCTTCTGTGGAACACAAAAGAAGATATTTTGAAAAACGTTTCCTCCATATAATCAGTGATAGTCAACAGGGTCCAGTGTTGTTTTGGACCTCATTGACTTATAGACAAAATGTTTTCATTCTTCAAAATATTCAGAACATGACTACTTTTGTGCTACAGAGTAGAAATAAAGTCATAATGGTGAGTAAATGATGACAGATTTCTTTTGTTGGTGAAATAGTTATTTAAAATGGTAAAGGACGGAGAGGTCACACTATTATAGGAACAAATGTAGGAGATACAGAGTGAGCATGAGAGAAAGACTGAGTGTGAGAGAGAGCAGTTGCTCCAGGTCTGGCCTCCCTGTGGGGGTCCATCGCAGCCCGGCTGCCCGATCTTTCACAGGCACAGAGCACCAGCCCTCACAGAGCAACACCAAGCTCTGATTCACTGCAGGGACGAGCCGCTTAGTTTGAATCCTAAAACGCCCATTTGATTATTTGTACACACCTTAGCAGTATAATTTTACCAGCATGCCACTTAAACATCAATGAATTGCACTTAAGTACCTTTCAATGTGTGTTGAACTGGTGGAACCAATGGAACGAATGGCTTAGCGAATTGTGTAATGTTTACTACTTAAGGCTTTTGACAAGGCAAAAACGCACTTTTTTAGACTATCACCAGAAGAAGTGTAATGCTTTTTCAAAATGACGGTGCCAAGTGGATTTTGAATGTAACTTCCAAAAAAAGTATTTGTGTTTTTGTTAATTAACCTGCAAGATCATTGTAGGTCAAAAAGTGTCATCTAAAAAACTGGATGAAAAAAATGGTTCATCCAGTGGAGTCACATGATTTTCTTTAAACAAACGATCATTTATCCACCCTAATACTGTCAAGTGTGCTGCAGTTACCCAAGACGCATCCCCTGTGTCTCCGGCTCGATTTGCTCAGCTTCTAAACCGTTGAGACTCAGTCAGCTCAGATTACCATCAGACCAGCTCGATCATAACTAATCAATTAGACTTCAAACGAGATCCTCCCCACGGTCCAACATCTGCAGCCCAAAAGCTAAGTGCACTGGCTATTTAGGAGGTGCTTTGAGTTCAGTGAGTTTCAGTGAGTAGAAATGGAGAGCAAAGCGCAGAGACTAAGAGAGAGGAAGACTGGTAAAAATAAGACCCAGAGCCACGGTTACATTAGCGAGCTCATTGTGACTGCGGTAAAGACAACATGTCCGCTGGGAATGATGGATGTTTCTCCCTCAATGTGACAGAAAGTGCCACAGTTTGAAGTGCAGGCTACGGGCAGGATTGTGGCTGGCTTAACATGGGCAACATCTCTCATGATCAGTGTCCAAAAGCAGAACAGGAGACAGCTGATGGGATCCGAAACTGTCAATTAGGAGTTCCTGGGTGGAGCTGTGGAGACAGGGAGAGGTCTGGGTGAGGATCATGACTGTGACAGAAGGACTTCCTCCAAGGCAGAGCTTGTTGGGTCCTCTTTTTTTCTTCTTAAAGCTCTATTCTAACCAGTCATTTTCCTTCATATCCATCTACAAGTGGAAGTCGTATACTTGAGTAATATACTAAGTAGTATACTTAGTAGTATACTAAATTCACATATGTATCCTATATATACACACAAAAGTGTGGAGTACTTATGATTTTTGAATCATAATTTTAAAGAAGTCTTTCTGAAAGAAGTCTCTCTAATGCTTACCAAGGCTGCATTTATTTAATCAAAAATACAGTAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU283989 True 8048 TUCP 0.42 2 3688643 3696711

Neighbor

gene id symbol gene type direction distance location
CI01000058_03668662_03671701 FEZF2 coding downstream 16458 3668546 ~ 3672185 (-)
CI01000058_03239666_03330001 CDH4 coding downstream 358642 3239666 ~ 3330003 (-)
CI01000058_03154548_03160071 NA coding downstream 528572 3154539 ~ 3160071 (-)
CI01000058_03136045_03137264 PRELP coding downstream 551379 3135699 ~ 3137264 (-)
CI01000058_03128328_03131680 NA coding downstream 556781 3128275 ~ 3131862 (-)
CI01000058_03904018_03906800 THOC7 coding upstream 207186 3903897 ~ 3908108 (-)
CI01000058_03950901_03956376 PSMD6 coding upstream 254190 3950901 ~ 3956376 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 280153 3976864 ~ 3991942 (-)
CI01000058_04100253_04135812 ADAMTS9 coding upstream 403002 4099713 ~ 4136508 (-)
CI01000058_04178879_04179912 NA coding upstream 481576 4178287 ~ 4181797 (-)
G250268 NA non-coding downstream 14677 3673736 ~ 3673966 (-)
G250260 NA non-coding downstream 34067 3654062 ~ 3654576 (-)
G250259 NA non-coding downstream 34653 3653681 ~ 3653990 (-)
G250225 NA non-coding downstream 48737 3639173 ~ 3639906 (-)
G250257 NA non-coding downstream 51546 3636813 ~ 3637097 (-)
CI01000058_03684461_03827727 CADPS, CADPSA non-coding upstream 17332 3684461 ~ 3827727 (-)
G250238 NA non-coding upstream 97933 3794644 ~ 3879551 (-)
G250231 NA non-coding upstream 138346 3835057 ~ 3838932 (-)
G250227 NA non-coding upstream 142368 3839079 ~ 3851329 (-)
G250223 NA non-coding upstream 155731 3852442 ~ 3898562 (-)
CI01000058_02859435_02860658 FAM72A other downstream 827450 2858483 ~ 2861491 (-)
G247592 NA other downstream 3033694 646443 ~ 654949 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G315651 NA non-coding NC_048568.1 CM023222.3 8078031 ~ 8079040 (+)
tiger barb (Puntius tetrazona) G82950 NA non-coding NC_056709.1 CM032078.1 18832176 ~ 18838951 (-)
mexican tetra (Astyanax mexicanus) G91412 NA non-coding NC_035906.1 CM008309.1 16647903 ~ 16656182 (-)