G250231


Basic Information

Item Value
gene id G250231
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3835057 ~ 3838932 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283990
GAGTAACTGAATTATTTGTATACCCTTTGCATTATCTCCATTGGCTACCCTATATAAAAATGTTTTTAAAAGAAATAAAGATGAAAGAATTCAAGTAATACCTCAATATAATTGGTGAGCCAGAAGAAATCTGGATCTGTGTTCTCCACGGTGAAAAGAACGTTCCCTCTGGGAATGATCTTCCCCTCGGGAACTGCTTTGATACGGATTGGAAGGCGGCCATCATATTTCTGACAATACAATTAGGAACAGGAAGAAGGCAGGTGGTCGTTATCTTCGTGTGCATTCATCTCCGGAAAAAAGTAAGCAGACTTCAAAGTCATGTAAGAAACTTTGACTTTGATATGAACTTCTGTTTGTACCTCTAAAACTTTTCTCCATCCCTCTTCATCGAACACTGCCTGTTTAAAGTGCATCTGATAAAAGACTTTCGCCTGCTGAATCTTTTCCTCTGTGATAACTTGACCTGCAAGATATTTAGACAAATACATGAGTTTCTAAGATGAGCACACATGAAAAACTGTTTTGCATCTTTATATAAAGCATAAAATGTTCAATGTATAAACACTATCGCTATCAAGTGGCACTTTCTATGTAGTTAATTGCAAGTTTTACAACGGCCATGGCATCTTGCAAGGAAAATGCAATAAAGTGCAACACCAGAATAAATGAAATATTCATTGCACAAACAGTGAATACAAATAGTGTGCCCTGAAAAAAATTTAAATCAGTGGGGACAAACAAAATAAAACACTGCCGTTCACACATTCTGTTCATGGTTGTAGTTTAAAACCCACACCACAAAATAAGCACTTTCTGGCTTGAAAAACTAAAATGGGAAGCTTAAGGGGAATTAGCCTTATGTAACTGTAATGTTTGTTTGATGACAACATAATCTACTTATTTTAACTTACTCTTACAGGGCTAGAAATGGGTAAAAGCATCAAAATGGCAAAGAAAACACTAATATTGAATGTAAACAGATGTGTTAAAGTGCCCCTATTATGCTTTTTTGAATATTACCTTTCATGCAGTGTGTAATAGAGCAAGAGAAAGAATTGATAATGAATTGCCAAAACGAGTCGTCAGCAATTCCAGTCTCACTTCCTGTTACATACCTATGTAACAATGTAAAAAATTAGCACAATGTCAGCATGGTTTGACCCGCCCTCAAACACTGTAGTTGTAGCTGAGGCCTGGAAGTGTTTGGTTCGTGCTGTCGACATGTCGAGAAGACGCTGTTTTCAGCGCTGTAAATCCCCTTTACATTGACTTCAAAAGGAGGAGTACTCGCGCAGGAATTGATCCGTAAAAAATGACGCCGTCGTTACTGTTCAAATCACTATGTATCAAGCGCTGAGCAAGCCTCCAGAGCTGAAATGCAGATATGATAATAAGCGTTGTTTCTGATAAGGTAATAAAAATGCAGATAAGGTAATAAGTTTCGTTTCCGACACGCGCTGTAAGCGGTAGACCAATCACAACAGACTAAATCTTCAAACTGCTTTCAAACTCTTTATGAAATTAGATGATGTGCAATGTATATTAGTGTTGTCACGATACTGGAATTTCCAACTTTGATACGATACATTGAAAAATATCAATATGCGATACCATTTTCGAAACCACGGGGAAAACTGCCACATATACCGCCATACAGATAATTGGCTATTATCTCAAAATTTAGGTAATTTTGTTGTAATAGCTTTCACACACAGCACAGGGAGGTTTTATTTGAATCACTGAACAACATTTACAAAAAAAGACAAGTTAACAGTCAGTAATAAAATAAGAACAAATAAACAAATATAAATAAACAAACGATAGCACAAATAAATACAATAGAATAAAGAGACAAATTAAATAAACATGGCTTTAAGTTTTTCAGGTGGGTCTAACAGTAGTATTCAGGTAAAAAAAATACTACAGAAATGAAAGTAATCAAATGTAAAATAACACTGGATAGTTTTCATTGTAAAAATTAAATTAATGCTTACAATTAAAGTTAAAAAAGTTATTCAGTCAGTTATTCAGAGCAGAGAGTCATTTTCTCTATCTTTTGTCCTTTGATTAACATGACTTTAAGAGCTTATGCACAGATCGAACACAACGTGTTTTCTCTCAACTATTTAAGCTATTAACTGAATGTATATATCTGAATACTCAGCAAGATGGCATTTTGACAATTTGTGTATATTTGAGTATATTTTGCGCTTTTGGTGTGAGCGCGAAACCTGCAGGAATTACTAAAATTATGCGCAATACAAGCACTATTCAACCAGGGCAAATGAGACGAGTGAGTGAGAGGAGGCGGGTGTATGTCAATTTGCTGTCGTAGAGAAGAGAATGTGCAGCTGGTATAGGTATATCGATACTGCAGAAAAGGAGTATGGGAACCGTTTCAGATATTTCAGTATCGATATATTGATATTTTTAACAACACTAATGTATATTCATTTATATTATAAGAAAACTAAAGTGTTTTTGTTTTGTTTTTTTTACCTGGGATGCATGCAAACCTATTGTAGGAGACTTCCAAAACAAAATAGCATATAGGGGCACTATAAACCACAAAGGGATGATGACAGAATTTTCTCACCCTTATGTCATTCCAAACCTGTATGACTTTCTTTCTTCTGTTGAACATCAAAGATGTTCAACAGAATTTTTATATTTAAAAAAAAAAAAATTTTAAATATAAATTTTTTATATTTAAAAAAATGTCTGTGCTTTCATTGTACGGACTAAAACAGCTTAAACATTCTTCTAAATATCTTCTTTTGTGTTCCACACAAAACAGTTCAGTTTTGTAATGACATGAGGGTGAATGCATGGTTCGTAATTTTCATTTTGGGCCAAGTTCTCCCTTTTAATCATACATTTATAAACTCCTGCAGCTTGTATTGACTGCATGACTGTCTTTTATAACTGTCCTTGAATGTGAGCTATTAGCGGTTTGGGGGCAAGTTTTCCATTACCCAATCAGGTGAGTGACATTACGTGAAAAACACTTTGTCCGTGCCAGTACATGAACAAACTCAAAAACAAACAGTATGTCCGAGTGAGCCAACAAAATTGTGCAGGAGTTACACAAAGATTAAATTACCTGCTAGGTATTTCTTCAGGAGATACTGGAGGCCAAAAAACACCACCTCACTGAACTGCGCCCCCTTTTTGCGCCGACACTCAAAATAGGAGTAGACTTTATTGACATTGGGTGGGTATTGCTTGTAGTGGGTAATCTGAAAAAAAAAAAGAGAGGAGCTTTGAGTATTACAATTGTTTACACACTCACAGATTCACTTATTCACTACCATTCAAAAGCTTGGGGTTGGTAAGATTTTTTTAAATGTTTTTGAAAGAAGTCTCTTATGCTCATCAAGGATGCATTTATTTGATTAAAAACACAGGAATATTGTGGAATGTTATTAATTTAAAATAACTGTTTTCTATTTTAATATATTTTAAAATGTAATTTATTCCAATGATAGAACATATGGAATCAAAGCTGAATTTTCAGCATCATTACTTTAGTCTTCAGTGTCACATGGTCCTTCAGAAATCATTCTAATACGCTGACTTGCTGCTCAAGAAACATTTCTTATTATTACCAGTGTTGAAAACAGTTTAATATTTTGTGGAACCTGTGATACATTTATTTCAGGACTCTTTGATGAATAAAAATTCAAAGTTTATTTGAAATAGAAATCTTTTATAACATTATAAACTGTCACTTTTTAATAATTTACTGACCCCGTGCTGAATAAAAGTATAATTTCTTTAAAACAAAAAATTACCCCAAACCTTTGAACAGTATGATTCACTATTACACAACTATAGGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU283990 True 3844 lncRNA 0.34 2 3835057 3838932

Neighbor

gene id symbol gene type direction distance location
CI01000058_03684461_03827727 CADPS, CADPSA coding downstream 7330 3684461 ~ 3827727 (-)
CI01000058_03668662_03671701 FEZF2 coding downstream 162872 3668546 ~ 3672185 (-)
CI01000058_03239666_03330001 CDH4 coding downstream 505056 3239666 ~ 3330003 (-)
CI01000058_03154548_03160071 NA coding downstream 674986 3154539 ~ 3160071 (-)
CI01000058_03136045_03137264 PRELP coding downstream 697793 3135699 ~ 3137264 (-)
CI01000058_03904018_03906800 THOC7 coding upstream 64965 3903897 ~ 3908108 (-)
CI01000058_03950901_03956376 PSMD6 coding upstream 111969 3950901 ~ 3956376 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 137932 3976864 ~ 3991942 (-)
CI01000058_04100253_04135812 ADAMTS9 coding upstream 260781 4099713 ~ 4136508 (-)
CI01000058_04178879_04179912 NA coding upstream 339355 4178287 ~ 4181797 (-)
G250268 NA non-coding downstream 161091 3673736 ~ 3673966 (-)
G250260 NA non-coding downstream 180481 3654062 ~ 3654576 (-)
G250259 NA non-coding downstream 181067 3653681 ~ 3653990 (-)
G250225 NA non-coding downstream 195151 3639173 ~ 3639906 (-)
G250227 NA non-coding upstream 147 3839079 ~ 3851329 (-)
G250223 NA non-coding upstream 13510 3852442 ~ 3898562 (-)
G250395 NA non-coding upstream 328880 4167812 ~ 4168126 (-)
G250326 NA non-coding upstream 469225 4308157 ~ 4310100 (-)
G250409 NA non-coding upstream 497928 4336860 ~ 4337089 (-)
G250230 NA other downstream 138346 3688643 ~ 3696711 (-)
CI01000058_02859435_02860658 FAM72A other downstream 973864 2858483 ~ 2861491 (-)
G247592 NA other downstream 3180108 646443 ~ 654949 (-)

Expression


Co-expression Network