G249886


Basic Information

Item Value
gene id G249886
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4217928 ~ 4218769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283584
ATTATCTATATCTTTATATATATATTTACACACACACACAAGTCAATTATCCAGAAAACCAGCTGAGCCAACAGCGCGTTTCCTGCAATGAGAAATGTGTTTTAATAGGCCAAACATGCTGTAATTTTTACACGAGTATACGTGTGTATATATATGTCTTTTATAGGAATGAAGAGACATATATCATGTTTTTACCCTTTAGATCTTTCTTCGGACTCTACTCTAATTGGTAGGCCAGTGAGTGTTGATGAAAAGGAATGTTGTGTGTGTGTTTGTGTGCTTCTTTGTGTGTGGTGGGATTTGATGCCTGACATTAAGGCCAGCAATTAAAGGTGAGATGTGAGCACAGGGAATACTTAAAACATCCCAGACACATTTCATAGACATTAGAGAATGCCTGTGGTGTGTACCAGCATGAACCACTGAACTTGGATTACTCCAATGACAATTAAAGTGGTTTTAACATAAAAGTTTTTATCTTTTTATCCTTAGGCCAACATATAGTGTTAGTCAAGGTATTTTGCACCAAAAAACAGCGAGTGCCAGGCTCTGACTGAATGCTCTGAAAACAGGCAAAGCAGGATTTTGAAGCTCTGAGCTTCTGGAAGGCTTTTGGATTTGTGCGCAAAACTCTTGGAGTAATTCTCCCAAGCTGTAACTTTTAAGATGCTGGTATTCAGTGTTTTCTCCCATTTCACACACACACACACACACACACACACACACACACACACCAGTCTCTCTATTCCTCTTAGTCTGTTTCTCTGGATTTCTTTCATTCTCTTGTGCTGTCTCTGGACTGTAGAGGCAGCGGTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283584 True 819 lncRNA 0.39 2 4217928 4218769

Neighbor

gene id symbol gene type direction distance location
CI01000058_04174884_04175951 RHOL coding upstream 41098 4174800 ~ 4176830 (+)
CI01000058_03959155_03965275 SLC2A9L1 coding upstream 252330 3959155 ~ 3965598 (+)
CI01000058_03915537_03946197 ATXN7 coding upstream 269855 3914922 ~ 3948073 (+)
CI01000058_03889526_03896649 SYNPR coding upstream 321173 3889314 ~ 3896755 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding upstream 367205 3846867 ~ 3850723 (+)
CI01000058_04263520_04265153 NA coding downstream 44355 4263124 ~ 4265628 (+)
CI01000058_04272001_04275349 NA coding downstream 53137 4271906 ~ 4275431 (+)
CI01000058_04303891_04308850 NA coding downstream 85035 4303804 ~ 4308997 (+)
CI01000058_04344622_04358133 NA coding downstream 124252 4343021 ~ 4358133 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding downstream 141727 4360496 ~ 4366118 (+)
G249873 NA non-coding upstream 46836 4170590 ~ 4171092 (+)
G249869 NA non-coding upstream 63437 4154247 ~ 4154491 (+)
G249839 NA non-coding upstream 101536 4115652 ~ 4116392 (+)
G249776 NA non-coding upstream 163481 4024700 ~ 4054447 (+)
G249774 NA non-coding upstream 198235 4019469 ~ 4019693 (+)
G249899 NA non-coding downstream 21468 4240237 ~ 4240895 (+)
G249970 NA non-coding downstream 122003 4340772 ~ 4340984 (+)
G249981 NA non-coding downstream 144938 4363707 ~ 4413637 (+)
G249980 NA non-coding downstream 199156 4417925 ~ 4418264 (+)
G249979 NA non-coding downstream 201579 4420348 ~ 4420792 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2420196 1794468 ~ 1800421 (+)
G247940 NA other upstream 2761481 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2929658 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3620757 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3762184 434913 ~ 455744 (+)
G250039 NA other downstream 475639 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 607607 4864571 ~ 4888216 (+)

Expression


Co-expression Network