XLOC_010150 (trmt11)


Basic Information

Item Value
gene id XLOC_010150
gene name trmt11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40043673 ~ 40074145 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020128
CGCACAATATACTTGTCGGATGATGTTGAATGTTGCACACCAACATGGCGCTCCACTGTGGTCGGGCGTGTAGGCAATATTTACTTCATCTGGCACACGATAACGTCGATTTTAGATTAGCGGAAATAAAAGCATTACTCTCTCTAAGGGACCGGCCGTTTGAGACACCCGAAACATTTAAAGAAAAGTCTCCCTTCTGGCATCTAAATGGCTTGTCAGAAGACGACATACGGAGTGTCATGTCCAGAACGGTTTGTGGAAAgtCTGCTTTTGAACTGTGGGGTCATGGAAAGACGACAGAGGAGCTTCGGAGGTCGTTATTGGAGTATCCATCAGAAAACATGGCTCCATATCTGCAGCAAAACTCAACCTATAAGATCAATGTCTACACTTTTAACAAAACATTAGAATTTAAGGACAGAATCAAAAAAATCGATgCTCTAGACTTCTTACCATTTGAAGGAACAGTTAACCTCAAGGACCCAGAACATATTTTCTGCTTGCTAGAGGATTATGGAACTGATCCTAATGACATCCCGGAAGAGCCTGTCTATGTGTACTTTGGGAGATGGATTGCAGACGGTCAGAGAGAGTTAATTCGCTCTTACAGTGTGAAGAAGAGACATTTCATTGGAAACACTAGTATGGACGCTGGCCTTTCTTTCATTATGGCCAATCATGCCAAAGTTAAAGCTAATGACTTGGTTTATGATCCTTTTGTTGGAACAGgtAGTCTTTTGGTAGCATGTTCACACTTTGGGGCATATGTATGTGGGACAGACATTGATTATAACACTATCCATGGAATAGGAAAGGCCAGCAGGAAGAATCAAAAATGGAGAGGACCAGATGAGAACATTCGAGCAAACTTGCGTCAGTATGGGGCTGAAAATCTCTATGTGGACGTCATGGTGTCTGATGCCTCCAAACTGGTTTGGAGACGAAATGCCCAGTTTGATGCCATTATTACAGACCCTCCATATGGCATTCGTGAGTCCACACGGAGAACAGGATCTCATAAAGATATCATCAAACCTCCTGAGGATTTCTCTGGAGAGAGTCACGTGCCCGTTTCAATGGCTTATCATCTCAGTGATATCTTTGCCGACCTCTTGAATTTTGCAGCCCATCACTTGGTTTTAGGTGGACGTCTTGTCTACTGGCTTCCTATCTACAGGCCAGAGTACTGCGAAGAGATGGTGCCTCTTCACCCCTGTTTGACTCTCATCAGCAACTGCGAACAAACCCTTTCCAGCCACACATCACGAAGACTCATCACCATGGAGAAGACCAAAGACCCAGAGGATTCGGACAGTCTAGCACACCTTGCTGACCCTCGCTTCACCCCATACCACGGTCACAACTCTTTCAGAGAAAAATACTTCAGCGGTCTCACCAAGAAAAATGGAAAGAACGCCAAAGTCACTGCAGAAAATGAAGATTAAAACGTAAAAAACACTGTTTTATGCttgtatacaattttttttacaatctttttaTTCCATAATTTTGATATGTAAATATGTTGTTTCAAATAAAACACATTGTTTTATTA
>TCONS_00020129
GCACACCAACATGGCGCTCCACTGTGGTCGGGCGTGTAGGCAATATTTACTTCATCTGGCACACGATAACGTCGATTTTAGATTAGCGGAAATAAAAGCATTACTCTCTCTAAGGGACCGGCCGTTTGAGACACCCGAAACATTTAAAGAAAAGTCTCCCTTCTGGCATCTAAATGGCTTGTCAGAAGACGACATACGGAGTGTCATGTCCAGAACGGTTTGTGGAAAgtCTGCTTTTGAACTGTGGGGTCATGGAAAGACGACAGAGGAGCTTCGGAGGTCGTTATTGGAGTATCCATCAGAAAACATGGCTCCATATCTGCAGCAAAACTCAACCTATAAGATCAATGTCTACACTTTTAACAAAACATTAGAATTTAAGGACAGAATCAAAAAAATCGATgCTCTAGACTTCTTACCATTTGAAGGAACAGTTAACCTCAAGGACCCAGAACATATTTTCTGCTTGCTAGAGGATTATGGAACTGATCCTAATGACATCCCGGAAGAGCCTGTCTATGTGTACTTTGGGAGATGGATTGCAGACGGTCAGAGAGAGTTAATTCGCTCTTACAGTGTGAAGAAGAGACATTTCATTGGAAACACTAGTATGGACGCTGGCCTTTCTTTCATTATGGCCAATCATGCCAAAGTTAAAGCTAATGACTTGGTTTATGATCCTTTTGTTGGAACAGgtAGTCTTTTGGTAGCATGTTCACACTTTGGGGCATATGTATGTGGGACAGACATTGATTATAACACTATCCATGGAATAGGAAAGGCCAGCAGGAAGAATCAAAAATGGAGAGGACCAGATGAGAACATTCGAGCAAACTTGCGTCAGTATGGGGCTGAAAATCTCTATGTGGACGTCATGGTGTCTGATGCCTCCAAACTGGTTTGGAGACGAAATGCCCAGTTTGATGCCATTATTACAGACCCTCCATATGGCATTCGTGAGTCCACACGGAGAACAGGATCTCATAAAGATATCATCAAACCTCCTGAGGATTTCTCTGGAGAGAGTCACGTGCCCGTTTCAATGGCTTATCATCTCAGTGATATCTTTGCCGACCTCTTGAATTTTGCAGCCCATCACTTGGTTTTAGGTGGACGTCTTGTCTACTGGCTTCCTATCTACAGGCCAGAGATTCGGACAGTCTAGCACACCTTGCTGACCCTCGCTTCACCCCATACCACGGTCACAACTCTTTCAGAGAAAAATACTTCAGCGGTCTCACCAAGAAAAATGGAAAGAACGCCAAAGTCACTGCAGAAAATGAAGATTAAAACGTAAAAAACACTGTTTTATGCttgtatacaattttttttacaatctttttaTTCCATAATTTTGATATGTAAATATGTTGTTTCAAATAAAACACATTGTTTTA
>TCONS_00020130
ACACCAACATGGCGCTCCACTGTGGTCGGGCGTGTAGGCAATATTTACTTCATCTGGCACACGATAACGTCGATTTTAGATTAGCGGAAATAAAAGCATTACTCTCTCTAAGGGACCGGCCGTTTGAGACACCCGAAACATTTAAAGAAAAGTCTCCCTTCTGGCATCTAAATGGCTTGTCAGAAGACGACATACGGAGTGTCATGTCCAGAACGGTTTGTGGAAAgtCTGCTTTTGAACTGTGGGGTCATGGAAAGACGACAGAGGAGCTTCGGAGGTCGTTATTGGAGTATCCATCAGAAAACATGGCTCCATATCTGCAGCAAAACTCAACCTATAAGATCAATGTCTACACTTTTAACAAAACATTAGAATTTAAGGACAGAATCAAAAAAATCGATgCTCTAGACTTCTTACCATTTGAAGGAACAGTTAACCTCAAGGACCCAGAACATATTTTCTGCTTGCTAGAGGATTATGGAACTGATCCTAATGACATCCCGGAAGAGCCTGTCTATGTGTACTTTGGGAGATGGATTGCAGACGGTCAGAGAGAGTTAATTCGCTCTTACAGTGTGAAGAAGAGACATTTCATTGGAAACACTAGTATGGACGCTGGCCTTTCTTTCATTATGGCCAATCATGCCAAAGTTAAAGCTAATGACTTGGTTTATGATCCTTTTGTTGGAACAGGTGAGCAAATTTTCAAGCACATTGAAATGCAGTTATTTATGTCTCATTATGAATTCAGTAATATCTGTTTCAGTACACCATATTTGAGGCAGTTGtgaaacattatttacattaatttgcATACCATTATAGATTGGTATTGGTattggttttaaatgtttttgaaagcagatttacaaattgttttacaataattttttttaatgtttaatttatttttgtatataacaaaatattattataatatattataacatacATCTGTTCCATTTTTCGCAGTCATTATTCCATTTTTTAATATTAGATGATCCTTAAAAAAAGATTGTAATGTGCTGATTTTATGCATATTAAATGATGAATtttgatgaataaatgattttgtgGATTCA
>TCONS_00020131
GTAAAAACTTTAGACCTTTATTTATACTCaaactttaatgtaaaaattcgtatttaattatttaaactgtCAGTACGGAGTTTTGGACTGTACGGCTGATTGTTGTTATTTTGCTCAGCTGAAGTATTGTTGGTTTATTAGTACACATTAATAATTAACTGTCTgaattttttaattgttgttaCAGGAAATAAAAGCATTACTCTCTCTAAGGGACCGGCCGTTTGAGACACCCGAAACATTTAAAGAAAAGTCTCCCTTCTGGCATCTAAATGGCTTGTCAGAAGACGACATACGGAGTGTCATGTCCAGAACGGTTTGTGGAAAgtCTGCTTTTGAACTGTGGGGTCATGGAAAGACGACAGAGGAGCTTCGGAGGTCGTTATTGGAGTATCCATCAGAAAACATGGCTCCATATCTGCAGCAAAACTCAACCTATAAGATCAATGTCTACACTTTTAACAAAACATTAGAATTTAAGGACAGAATCAAAAAAATCGATgCTCTAGACTTCTTACCATTTGAAGGAACAGTTAACCTCAAGGACCCAGAACATATTTTCTGCTTGCTAGAGGATTATGGAACTGATCCTAATGACATCCCGGAAGAGCCTGTCTATGTGTACTTTGGGAGATGGATTGCAGACGGTCAGAGAGAGTTAATTCGCTCTTACAGTGTGAAGAAGAGACATTTCATTGGAAACACTAGTATGGACGCTGGCCTTTCTTTCATTATGGCCAATCATGCCAAAGTTAAAGCTAATGACTTGGTTTATGATCCTTTTGTTGGAACAGgtAGTCTTTTGGTAGCATGTTCACACTTTGGGGCATATGTATGTGGGACAGACATTGATTATAACACTATCCATG

Function

symbol description
trmt11 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog).

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-953 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog).

Ensembl:

ensembl_id ENSDARG00000040033

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020128 False 1555 mRNA 0.43 13 40043673 40074145
TCONS_00020129 False 1397 mRNA 0.42 12 40043707 40074142
TCONS_00020130 False 1082 lncRNA 0.35 7 40043709 40049273
TCONS_00020131 True 869 lncRNA 0.38 7 40043795 40052553

Neighbor

gene id symbol gene type direction distance location
XLOC_010149 hint3 coding upstream 11894 40024883 ~ 40031779 (+)
XLOC_010148 CT025588.2 coding upstream 31682 40011869 ~ 40011991 (+)
XLOC_010147 NA coding upstream 66285 39972169 ~ 39977388 (+)
XLOC_010146 NA coding upstream 77298 39952357 ~ 39966375 (+)
XLOC_010145 NA coding upstream 141733 39857185 ~ 39901940 (+)
XLOC_010151 CT025588.3 coding downstream 1400 40075545 ~ 40082056 (+)
XLOC_010152 NA coding downstream 8757 40082902 ~ 40114807 (+)
XLOC_010153 NA coding downstream 57319 40131464 ~ 40339027 (+)
XLOC_010154 BX470182.2 coding downstream 109598 40183743 ~ 40183859 (+)
XLOC_010155 BX470182.1 coding downstream 142898 40217043 ~ 40220920 (+)
XLOC_010144 NA non-coding upstream 411605 39631610 ~ 39632068 (+)
XLOC_010157 BX072576.2 non-coding downstream 272302 40346447 ~ 40354078 (+)

Expression


Co-expression Network