G249980


Basic Information

Item Value
gene id G249980
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4417925 ~ 4418264 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU283681
TGCTGGAGCTGTAGTCTGAGCGGCTTGGCCGTATTCAGCCGAGCTCTCATCATGTTAGCACGAGGATGCATAGCGCCCATACCACCCATTCCGGGAAAACCACCCTGCTGGCTCATCTGACTCATCATGGGGTTAAACCCTGGTCCAGACTGCCCCTGCTGGGGACCAGGACCAGAGAAGGGGTCTGTCGGAGGGGGCTGGTCCGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU283681 True 208 lncRNA 0.60 2 4417925 4418264

Neighbor

gene id symbol gene type direction distance location
CI01000058_04405407_04408449 ID1 coding upstream 8530 4405407 ~ 4409395 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding upstream 51807 4360496 ~ 4366118 (+)
CI01000058_04344622_04358133 NA coding upstream 59792 4343021 ~ 4358133 (+)
CI01000058_04303891_04308850 NA coding upstream 108928 4303804 ~ 4308997 (+)
CI01000058_04272001_04275349 NA coding upstream 142494 4271906 ~ 4275431 (+)
CI01000058_04466648_04523385 ZMYND8 coding downstream 47932 4466196 ~ 4523483 (+)
CI01000058_04556260_04565696 FGD5A coding downstream 137893 4556157 ~ 4566008 (+)
CI01000058_04584028_04613429 FGD5A coding downstream 165764 4584028 ~ 4613747 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding downstream 218954 4637218 ~ 4650506 (+)
CI01000058_04656762_04675421 SFMBT1 coding downstream 238052 4656316 ~ 4676097 (+)
G249981 NA non-coding upstream 4288 4363707 ~ 4413637 (+)
G249970 NA non-coding upstream 76941 4340772 ~ 4340984 (+)
G249899 NA non-coding upstream 177030 4240237 ~ 4240895 (+)
G249886 NA non-coding upstream 199156 4217928 ~ 4218769 (+)
G249873 NA non-coding upstream 246833 4170590 ~ 4171092 (+)
G249979 NA non-coding downstream 2084 4420348 ~ 4420792 (+)
G250013 NA non-coding downstream 33263 4451527 ~ 4452571 (+)
G250035 NA non-coding downstream 123735 4541999 ~ 4542243 (+)
G250049 NA non-coding downstream 258649 4676913 ~ 4677151 (+)
CI01000058_04678629_04687645 TMEM110 non-coding downstream 268371 4678102 ~ 4689520 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2620193 1794468 ~ 1800421 (+)
G247940 NA other upstream 2961478 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3129655 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3820754 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3962181 434913 ~ 455744 (+)
G250039 NA other downstream 276144 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 408112 4864571 ~ 4888216 (+)

Expression


Co-expression Network