G250075



Basic Information


Item Value
gene id G250075
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4727809 ~ 4738445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU283812
TTGGGGTCTCATGAAGCTTTATTAGGTTTAAGTGAACCTGGAAAAGAAAGTAAGGTCACTAAATTTTCTTTCAGCATCTAAACCACTTTGAAGCAACTCTGCACTCATTCATCTCACGTTAACATTGTCTGTGAGACCCATACGGTGACGGAGCAGGAGATCCAGCAAACACTGGATCTTGAGGATGCTAGGGCATGAAGGGGTATTTTACACCAGGAGGAACAAAAGACTTGAAGGGTTGAGGCCCATAGTACATTTGGTACATTGGAGGATAACCTGCAAACTGCTCAAACTGGGCAGCAGTGGTTGTGGAAGGTGTAGTTGTTGCAGGAGTAGTTGATTCAACTGGGCTCTTGAAGTGGTACATATAGGGAGGAAANNNNN

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU283812 True 384 lncRNA 0.44 2 4727809 4738445

Neighbor


gene id symbol gene type direction distance location
CI01000058_04678629_04687645 TMEM110 coding upstream 39314 4678102 ~ 4689520 (+)
CI01000058_04656762_04675421 SFMBT1 coding upstream 51712 4656316 ~ 4676097 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding upstream 77303 4637218 ~ 4650506 (+)
CI01000058_04584028_04613429 FGD5A coding upstream 114062 4584028 ~ 4613747 (+)
CI01000058_04556260_04565696 FGD5A coding upstream 161801 4556157 ~ 4566008 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 9979 4748424 ~ 4757638 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding downstream 31024 4769469 ~ 4774485 (+)
CI01000058_04777182_04780095 NA coding downstream 38097 4776542 ~ 4780376 (+)
CI01000058_04782847_04791049 UBA3 coding downstream 44402 4782847 ~ 4791555 (+)
CI01000058_04792565_04803181 TMF1 coding downstream 54120 4792565 ~ 4803404 (+)
G250049 NA non-coding upstream 50658 4676913 ~ 4677151 (+)
G250035 NA non-coding upstream 185566 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 275238 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 307017 4420348 ~ 4420792 (+)
G250098 NA non-coding downstream 145560 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 146017 4884462 ~ 4885100 (+)
G250120 NA non-coding downstream 166495 4904940 ~ 4905140 (+)
G250124 NA non-coding downstream 179927 4918372 ~ 4918573 (+)
G250187 NA non-coding downstream 346195 5084640 ~ 5137852 (+)
G250039 NA other upstream 30648 4694408 ~ 4697161 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2930077 1794468 ~ 1800421 (+)
G247940 NA other upstream 3271362 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3439539 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4130638 592331 ~ 597171 (+)
CI01000058_04864571_04888198 NA other downstream 87931 4864571 ~ 4888216 (+)

Expression



Co-expression Network