Item | Value |
---|---|
gene id | G250075 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000058 |
NCBI id | null |
chromosome length | 5213219 |
location | 4727809 ~ 4738445 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU283812 | True | 384 | lncRNA | 0.44 | 2 | 4727809 | 4738445 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000058_04678629_04687645 | TMEM110 | coding | upstream | 39314 | 4678102 ~ 4689520 (+) |
CI01000058_04656762_04675421 | SFMBT1 | coding | upstream | 51712 | 4656316 ~ 4676097 (+) |
CI01000058_04637318_04650366 | PRKCDB, PRKCD, PRKCDA | coding | upstream | 77303 | 4637218 ~ 4650506 (+) |
CI01000058_04584028_04613429 | FGD5A | coding | upstream | 114062 | 4584028 ~ 4613747 (+) |
CI01000058_04556260_04565696 | FGD5A | coding | upstream | 161801 | 4556157 ~ 4566008 (+) |
CI01000058_04748480_04757498 | QRICH1 | coding | downstream | 9979 | 4748424 ~ 4757638 (+) |
CI01000058_04769469_04774262 | TWF2B, TWF2 | coding | downstream | 31024 | 4769469 ~ 4774485 (+) |
CI01000058_04777182_04780095 | NA | coding | downstream | 38097 | 4776542 ~ 4780376 (+) |
CI01000058_04782847_04791049 | UBA3 | coding | downstream | 44402 | 4782847 ~ 4791555 (+) |
CI01000058_04792565_04803181 | TMF1 | coding | downstream | 54120 | 4792565 ~ 4803404 (+) |
G250049 | NA | non-coding | upstream | 50658 | 4676913 ~ 4677151 (+) |
G250035 | NA | non-coding | upstream | 185566 | 4541999 ~ 4542243 (+) |
G250013 | NA | non-coding | upstream | 275238 | 4451527 ~ 4452571 (+) |
G249979 | NA | non-coding | upstream | 307017 | 4420348 ~ 4420792 (+) |
G250098 | NA | non-coding | downstream | 145560 | 4884005 ~ 4884279 (+) |
G250095 | NA | non-coding | downstream | 146017 | 4884462 ~ 4885100 (+) |
G250120 | NA | non-coding | downstream | 166495 | 4904940 ~ 4905140 (+) |
G250124 | NA | non-coding | downstream | 179927 | 4918372 ~ 4918573 (+) |
G250187 | NA | non-coding | downstream | 346195 | 5084640 ~ 5137852 (+) |
G250039 | NA | other | upstream | 30648 | 4694408 ~ 4697161 (+) |
CI01000058_01794468_01800421 | KISS1 | other | upstream | 2930077 | 1794468 ~ 1800421 (+) |
G247940 | NA | other | upstream | 3271362 | 1452997 ~ 1456447 (+) |
CI01000058_01280337_01289153 | DNASE2B | other | upstream | 3439539 | 1278592 ~ 1289874 (+) |
CI01000058_00592498_00596709 | NA | other | upstream | 4130638 | 592331 ~ 597171 (+) |
CI01000058_04864571_04888198 | NA | other | downstream | 87931 | 4864571 ~ 4888216 (+) |