Gene
RNA
| Item | Value |
|---|---|
| gene id | G250095 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000058 |
| NCBI id | null |
| chromosome length | 5213219 |
| location | 4884462 ~ 4885100 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU283838 | True | 639 | lncRNA | 0.39 | 1 | 4884462 | 4885100 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000058_04806751_04821030 | NA | coding | upstream | 62767 | 4806751 ~ 4821695 (+) |
| CI01000058_04792565_04803181 | TMF1 | coding | upstream | 81058 | 4792565 ~ 4803404 (+) |
| CI01000058_04782847_04791049 | UBA3 | coding | upstream | 92907 | 4782847 ~ 4791555 (+) |
| CI01000058_04777182_04780095 | NA | coding | upstream | 104086 | 4776542 ~ 4780376 (+) |
| CI01000058_04769469_04774262 | TWF2B, TWF2 | coding | upstream | 109977 | 4769469 ~ 4774485 (+) |
| CI01000058_04923557_04926609 | NA | coding | downstream | 38190 | 4923290 ~ 4927654 (+) |
| CI01000058_05091135_05091372 | NA | coding | downstream | 206035 | 5091135 ~ 5092015 (+) |
| G250098 | NA | non-coding | upstream | 183 | 4884005 ~ 4884279 (+) |
| G250075 | NA | non-coding | upstream | 146017 | 4727809 ~ 4738445 (+) |
| CI01000058_04678629_04687645 | TMEM110 | non-coding | upstream | 194942 | 4678102 ~ 4689520 (+) |
| G250049 | NA | non-coding | upstream | 207311 | 4676913 ~ 4677151 (+) |
| G250035 | NA | non-coding | upstream | 342219 | 4541999 ~ 4542243 (+) |
| G250120 | NA | non-coding | downstream | 19840 | 4904940 ~ 4905140 (+) |
| G250124 | NA | non-coding | downstream | 33272 | 4918372 ~ 4918573 (+) |
| G250187 | NA | non-coding | downstream | 199540 | 5084640 ~ 5137852 (+) |
| G250219 | NA | non-coding | downstream | 295801 | 5180901 ~ 5181105 (+) |
| CI01000058_04864571_04888198 | NA | other | upstream | 625 | 4864571 ~ 4888216 (+) |
| G250039 | NA | other | upstream | 187301 | 4694408 ~ 4697161 (+) |
| CI01000058_01794468_01800421 | KISS1 | other | upstream | 3086730 | 1794468 ~ 1800421 (+) |
| G247940 | NA | other | upstream | 3428015 | 1452997 ~ 1456447 (+) |
| CI01000058_01280337_01289153 | DNASE2B | other | upstream | 3596192 | 1278592 ~ 1289874 (+) |
