XLOC_010153


Basic Information

Item Value
gene id XLOC_010153
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40131464 ~ 40339027 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020133
ACGCACAACGCGTTGCTGACGAGAACAACCACTGAGGGCTATACACGTCATCAACAGGAGCCGGTAGTGAAACGCGCGATATTTTGAATAAGTCATAAACAAACAGCAGAGAGCGATACTTTAGACGTTTATTGAATAAAACGCCTTTCACGCCGCCAATAATGTCGAAGAAAGCACCGAGAGCAGCCCTGAAGCACCACATGAAGAAGAATGCCAATATACGGATTGGAAAAAACGCGGACTTGATGGCTCAGCTCAACCTCCTGATGGTCCTGCATCGTCTAGCGGAGGAGTGTAGGGTAAAAGCTTTTGAGGAAAAATCAGCAACCATCAAAACTCACCATGTTCGAGCTGTTGCAAAGAAACTCTTAAAGAGCACACGTGGATAATACGGATGACTGAAACTTCCCATCACATCCCTTTGTTTGATCAACAACCCTGAGCCTTTTAcctaatttttactttaaaactttattttgtgtgAGCTATTATATCTGGGACCGTCAAAGATTTAATTCTATTATTTCCTTAGGACTTTTTTAACTTACTGTGGAATTTGCGTTTTCTTGTTCCAATTTTGGGTCTGATATCAGCATGTGATCCGTGAAGACGTTGAACCTGTGTAAACAGTGGATGATGGACAGTATCTAGCCCAGTTATCTAAAGCAACACATGTGTCCTTCATCTCTTTGGATAGTATTATGATTAATACCTGTAAATAAACAATTTGTACCACTTAACTTGGGTAGCACACGGCTGAGTAAATGTGcagtgttttttttccatgcTCTCTAAAGCAACAAGAAATTTGGCACTTAGCCATCGACAACATTGCAACCATTATCTGTGGCTTGCTCACGTAAGGAGGTTTTCAGCGGGTAACTTCTATCAGATGATATTTTGCTCTCTCTTGTTGACTCAGTATCAAATGGATGTCTTTTAACAAGATGGTATTTTTTGATTTCAGATTCAATCATTGCTGTTAGAGCTGTAAGAAAATACATGggtaaatctaataaaatatgtGTTAAGATC
>TCONS_00020134
GGTAGTGAAACGCGCGATATTTTGAATAAGTCATAAACAAACAGCAGAGAGCGATACTTTAGACGTTTATTGAATAAAACGCCTTTCACGCCGCCAATAATGTCGAAGAAAGCACCGAGAGCAGCCCTGAAGCACCACATGAAGAAGAATGCCAATATACGGATTGGAAAAAACGCGGACTTGATGGCTCAGCTCAACCTCCTGATGGTCCTGCATCGTCTAGCGGAGGAGTGTAGGGTAAAAGCTTTTGAGGAAAAATCAGCAACCATCAAAACTCACCATGTTCGAGCTGTTGCAAAGCTTCTCCATTGTCCGTCACCCTGTCTCCTCGCAGCCACTGCCACTCACTCCCGCTGGCGTCTTCACCACACGTCCAGGGCTCGGAGGTCATATCGAGGTATCAGGCGTGAGCTCCCAGGGCTGCCAGGGAGGCTGTCAGACCTGCTCGGTTTACAATGGCTGTCTGACCTGCAAACCCAA
>TCONS_00020135
TACTTTAGACGTTTATTGAATAAAACGCCTTTCACGCCGCCAATAATGTCGAAGAAAGCACCGAGAGCAGCCCTGAAGCACCACATGAAGAAGAATGCCAATATACGGATTGGAAAAAACGCGGACTTGATGGCTCAGCTCAACCTCCTGATGGTCCTGCATCGTCTAGCGGAGGAGTGTAGGGTAAAAGCTTTTGAGGAAAAATCAGCAACCATCAAAACTCACCATGTTCGAGCTGTTGCAAAGAGGAACTTTAACACCATGCTGGAGTGGTATTTTGTTGCAAATGAATCCGTACAAAAACACATTCCCACTCACCTCAACGTGCCAAGAAACTCTTAAAGAGCACACGTGGATAATACGGATGACTGAAACTTCCCATCACATCCCTTTGTTTGATCAACAACCCTGAGCCTTTTAcctaatttttactttaaaactttattttgtgtgAGCTATTATATCTGGGACCGTCAAAGATTTAATTCTATTATTTCCTTAGGACTTTTTTAACTTACTGTGGAATTTGCGTTTTCTTGTTCCAATTTTGGGTCTGATATCAGCATGTGATCCGTGAAGACGTTGAACCTGTGTAAACAGTGGATGATGGACAGTATCTAGCCCAGTTATCTAAAGCAACACATGTGTCCTTCATCTCTTTGGATAGTATTATGATTAATACCTGTAAATAAACAATTTGTACCACTTAACTTGGGTAGCACACGGCTGAGTAAATGTGcagtgttttttttccatgcTCTCTAAAGCAACAAGAAATTTGGCACTTAGCCATCGACAACATTGCAACCATTATCTGTGGCTTGCTCACGTAAGGAGGTTTTCAGCGGGTAACTTCTATCAGATGATATTTTGCTCTCTCTTGTTGACTCAGTATCAAATGGATGTCTTTTAACAAGATGGTATTTTTTGATTTCAGATTCAATCATTGCTGTTAGAGCTGTAAGAAAATACATGggtaaatctaataaaatatgtGTTAAGATC
>TCONS_00020138
AGTTACCAGACGAGCACACGAGCTGAGAGCAGGCGAGAGATAGTGAATTGCTCAACCGTGAAACTGTGAGCTATCGAGACTGAATAGAGAAAAGCGACGCTATTTACAAATCAGGTTTCACTGAAAAGTTCTTCGAGATGCTGTGATGAGGATGACGCGAGGACCTCCTACACGTCAAGCtcaataaataaagtaaccttCACACCTGGACGTGTCGTGCTGGATCACAGAGGGGAATACATACAGTCATTCGGGAAGACAATCCAACTTTTTTCTCACCATGCCAATTTAATTTGCTCGCCTCCTCCCCATCTTTACGTTTTGCGCTGGATGGAGAACTAGCACTTTTTCACTGTTTCCATGGAATGAGTGGCTCTCTCTTTGGATATCTCACAGTGGCACATATGTGGATTGCCTCCAATATGTTACTGCCGAATCGGCCCAGGTGCATATGGGCCATTGAAAATTCTCTTTCTTTTGCGCGTGAGCACAACTGGGGCTTCTGCCCGGTTTAGGAATAACATATTGAGTATTGCACACATCACAGTGCGATAAGCGACATTGAAATTGACAAGACAAGCATCATTCCCCTGATTACTATGCAATTGCAACTGATCTCCATTGTTTTGATCTTGCATTTTATGGAATACACAAACTGTCAGCATCACGGCTCCAGGCACCGGGGAAACAAACAGGTATCAGGCGTGAGCTCCCAGGGCTGCCAGGGAGGCTGTCAGACCTGCTCGGTTTACAATGGCTGTCTGACCTGCAAACCCAAGCTTTTTATTCACCTGGAGAGGGACGGGATGAGGCAGATCGGAGTGTGCCTGGCCTCCTGCCCCAATGGTTTCTACGGCACACGTTCCCCCGACAGGAACGACTGCATAAAGTGTGGGTCAGAGTGCGACTCGTGCTTTAACAGGAACTTTTGCCTGCGCTGCAGAGCAGGATCCTACTTGCACAAGGGCAAGTGCATGGAGAGCTGTCCAGATGGGCTGGTGCCGAGCGATACCAAGAAAGAGTGTGTTGCTGCATGTCCAGCGCTCTGTGACTTGTGTCAGAACAGTGACACGTGTACGAGGTGTGTGTCGGGACACTTCCTTCATGCAGGGCAATGCCATCATGTCTGTCCTGATGAATTTGAGCCAAATGACTCAATGGAGTGCATTCCGACAGTGCACTGTGAAGTGAGCGAGTGGAGCGAGTGGGGCACCTGCTCGCGCTCGGGAAAAACCTGTGGCTTCAAATGGGGTGAAGAAACAAGGACCCGGAAGGTCCTACAGAATCCTTCTCCAATGGGGAGCCCATGCCCTCCAACTTCTGAAAAGAGGGAATGCTTTGTCAAAAAGAAGAGATGTAAGCCGCCGAAAGGCCAGCGGCGAGGAGAGAAGAAAAAACGCTTTAACCTGCAAGAGAAAGTGACTGCAGAGGCCCGTCGAGAGAGGAAGAGGGAACGAGAGAAGGAGACAATCGACCGAGAGGAATCCGAAAGCAGGAACAAAACAGAACAGCGCCGCCGCAGGGACCAGAGCAGAGACGCTGGAACAGTATAGACAGATGCTGCTCCTCATTGCTCCTCTGCCTTTCTTTCCTCTATCAGTCCATGTCACCCCCTCACCCTCTTATCCCCTCGCCGAGGGGGTGTTGCTGCTACCTGTATAATTTAAACgtatactgtatatgcacatGAGAGAGGGGCGCATTGCAGACAGTGAGGACCTTCACCCCCTCGGGCCCCGTCTGGTGCTGGATTGAGGCTGAACTGTGTAACAGGGGCCAGGAATGTCCTAAGATCCGTGgaatggtttatttttttaaacgggGTCCAGGTACAGCACTGCATCGTGGTTTGAATGTAGGTTTTTAAGACATTAAAGTAGAGTTTTTGTATAAACGTCTGTATTTTTTTGGAGGAGGGCGGGGGTtgagtaaattaaaattaaatgagcaTGCTTACCGTCGCCACGGACAGCCTGAGACTGCATGTGGATGGGTGTATGAACTGGCTTTCTTCATACTGGATGAGCGACAACAATCTTCGCCGCAACAGTGTATTAACTTTTCGTTCCATTCTCTCTCCAAACAAAGTGTTGATTTGCCTGTCTGTATAAACAGGATCCGAGCTTTCCATCGAAGCCATCTGACCAGAAATCAAAAGCACCTGtatgtcaaataaacaaataccaaGTTTGTA
>TCONS_00020139
GTAAATATGACAGCAATTGTGCACCAAAGATGAACTTTTGATGGAAAACGTTGCTTTGAGAGGTATCAGGCGTGAGCTCCCAGGGCTGCCAGGGAGGCTGTCAGACCTGCTCGGTTTACAATGGCTGTCTGACCTGCAAACCCAAGCTTTTTATTCACCTGGAGAGGGACGGGATGAGGCAGATCGGAGTGTGCCTGGCCTCCTGCCCCAATGGTTTCTACGGCACACGTTCCCCCGACAGGAACGACTGCATAAAGTGTGGGTCAGAGTGCGACTCGTGCTTTAACAGGAACTTTTGCCTGCGCTGCAGAGCAGGATCCTACTTGCACAAGGGCAAGTGCATGGAGAGCTGTCCAGATGGGCTGGTGCCGAGCGATACCAAGAAAGAGTGTGTTGCTGCATGTCCAGCGCTCTGTGACTTGTGTCAGAACAGTGACACGTGTACGAGGTGTGTGTCGGGACACTTCCTTCATGCAGGGCAATGCCATCATGTCTGTCCTGATGAATTTGAGCCAAATGACTCAATGGAGTGCATTCCGACAGTGCACTGTGAAGTGAGCGAGTGGAGCGAGTGGGGCACCTGCTCGCGCTCGGGAAAAACCTGTGGCTTCAAATGGGGTGAAGAAACA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0000974 Prp19 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017069 snRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-9814 Predicted to enable heparin binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation; and posterior lateral line neuromast development. Predicted to be located in extracellular region. Is expressed in several structures, including digestive system; endoderm; forebrain neural keel; nervous system; and presumptive telencephalon. Orthologous to human RSPO3 (R-spondin 3).

Ensembl:

ensembl_id ENSDARG00000070081 ENSDARG00000100910

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020133 False 1035 lncRNA 0.40 3 40131464 40153682
TCONS_00020134 False 480 mRNA 0.51 4 40131526 40314090
TCONS_00020135 False 1005 lncRNA 0.39 4 40131580 40153682
TCONS_00020138 False 2194 mRNA 0.49 6 40301056 40339027
TCONS_00020139 True 629 processed_transcript 0.53 5 40302791 40320230

Neighbor

gene id symbol gene type direction distance location
XLOC_010152 NA coding upstream 16657 40082902 ~ 40114807 (+)
XLOC_010151 CT025588.3 coding upstream 49408 40075545 ~ 40082056 (+)
XLOC_010150 trmt11 coding upstream 57319 40043673 ~ 40074145 (+)
XLOC_010149 hint3 coding upstream 99685 40024883 ~ 40031779 (+)
XLOC_010148 CT025588.2 coding upstream 119473 40011869 ~ 40011991 (+)
XLOC_010156 mettl6 coding downstream 1195 40340222 ~ 40345372 (+)
XLOC_010157 BX072576.2 coding downstream 7420 40346447 ~ 40354078 (+)
XLOC_010158 BX072576.1 coding downstream 124338 40463365 ~ 40464426 (+)
XLOC_010159 nagpa coding downstream 169855 40508882 ~ 40541981 (+)
XLOC_010160 tp53inp1 coding downstream 221595 40560622 ~ 40569769 (+)
XLOC_010147 NA non-coding upstream 154076 39972169 ~ 39977388 (+)
XLOC_010146 NA non-coding upstream 165089 39952357 ~ 39966375 (+)
XLOC_010162 NA non-coding downstream 534214 40873241 ~ 40893518 (+)
XLOC_010163 NA non-coding downstream 602710 40941737 ~ 40945757 (+)
XLOC_010166 NA non-coding downstream 697620 41036647 ~ 41054652 (+)
XLOC_010168 NA non-coding downstream 790037 41129064 ~ 41129320 (+)

Expression


Co-expression Network