CI01000059_00991306_01000173 (BMCC1, PRUNE2)


Basic Information

Item Value
gene id CI01000059_00991306_01000173
gene name BMCC1, PRUNE2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 991031 ~ 1000173 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_00991306_01000173.mRNA
TTCCCCTTCTGGCGATGTGGGGATGGACCAGACTCATGAACGAAAGATGAGCTTTGAAGGTGCAGAGAGTAGACCAGCTCCACCCACCTCCTTGCCCCTACAGGGCCAAGGGGGTGTGGCCTCTCAGAGGAAGAAGCTGTCCGCTCCTCGTATTAGTCTATCATTGGACCAAAGTGAGGATGACCTGTTTGACACACCAGATGACCTTGACATTAATGTGGATGATCTAGACACACCTGATGAAGCGGATTATACTGACCATGAAATAGACTGGGAAGAGCCTCAAGCATCCCAGAGAGATTCTGTAAAAGAAACAGTTGAGCCCATTCCCACATACAGTGCTGAAGAAGAGCGGCAGGATTCCAAACTCTGGAGAACTGTCATCATTGGAGAGCAAGAGCACCGCATCAACATGAAGAGCATTGAACCTTACCAAAAAGTCATATCCCATGGAGGCTACTATGGCAATGGTGCAAATGCCATCATTGTGTTTGCAGCATGCTTCCTCCCTGACAGTGACAGAGAGGACTATCACGAGATCATGGAAAACCTCTTTCTGTATGTGATCAGTACACTAGAGCTCATGGTAGCAGAGGACTACATGATCATCTATCTGAATGGAGCCACTCCACACCGGAGGATGCCTGGCCTCAACTGGCTCAAGAGATGCTACCAGATGATTGACAGGAGGCTTAGAAAGAACTTGAAATCGTTCATTATTGTTCACCCATCATGGTTCATTAGGACAATTCTAGCCATCACAAAACCATTTATCAGCTCAAAGTTCAGCAGTAAGATAAAGTATGTGAACAGCTTAGCTGAACTGGAGGAGCTCATCCCAATGGAATACATCCACATACCCGAGTGCATCATCAGACTGGATGAGGAGTTACGGGAAGCAGCAGAGAGCTCTAAGTGAGTATTTTTATTTATTTATTTATTTTTTTTGGAGACAATTGTATTTTTGTCAAAATGTCATACAGTGCTCTAGCTATATAAACAAACATATCTTTTTCATTTCTTTTAAAGAATCAACAGCTTTCTCCAAGGAAGTGAGATTCCACAAGAATCTATGTAAGATTTCGAAATCATTTTAGTAAACAGTCATATTAGCAAATTAAGATGTTTTTAAAGTCAACATGAAATAGCAACAAACAAACCATTTTACATGTTCATGGTAATACTGTGAAAAAA

Function

symbol description
prune2 Predicted to enable exopolyphosphatase activity. Predicted to be involved in apoptotic process and polyphosphate catabolic process. Predicted to be active in cytoplasm. Is expressed in nervous system. Orthologous to human PRUNE2 (prune homolog 2 with BCH domain).
bmcc1 prune homolog 2

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG:

id description
K18449 PRUNE2, BMCC1; prune homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_00991306_01000173.mRNA True 1194 mRNA 0.42 8 991031 1000173

Neighbor

gene id symbol gene type direction distance location
CI01000059_00867492_00873239 NA coding downstream 117792 866665 ~ 873239 (-)
CI01000059_00853242_00855219 NA coding downstream 135747 852754 ~ 855284 (-)
CI01000059_00767393_00826328 NA coding downstream 164450 765733 ~ 826581 (-)
CI01000059_00697568_00720771 MAST4 coding downstream 270260 697568 ~ 720771 (-)
CI01000059_00570850_00600462 DKFZP459B1536, PIK3R1 coding downstream 390173 570850 ~ 600858 (-)
CI01000059_01022397_01031991 NA coding upstream 21565 1021738 ~ 1032204 (-)
CI01000059_01042330_01049708 GNAQ, GNA11B, GNAQ.L, GNAQ.S, GNA11, GNA11.S coding upstream 42077 1042250 ~ 1049927 (-)
CI01000059_01062456_01073742 HNRPKL, HNRNPK coding upstream 62283 1062456 ~ 1073742 (-)
CI01000059_01118201_01130248 KCMF1, KCMF1.L, YOY6 coding upstream 117543 1117716 ~ 1130248 (-)
CI01000059_01144728_01188827 CAMK4.L, CAMK4 coding upstream 143951 1144124 ~ 1188827 (-)
G251593 NA non-coding downstream 17122 973553 ~ 973909 (-)
G251589 NA non-coding downstream 31594 959224 ~ 959437 (-)
G251587 NA non-coding downstream 35388 955404 ~ 955643 (-)
G251586 NA non-coding downstream 38671 952144 ~ 952360 (-)
G251583 NA non-coding downstream 51171 939642 ~ 939860 (-)
G251505 NA non-coding upstream 116176 1116349 ~ 1116684 (-)
G251510 NA non-coding upstream 176346 1176519 ~ 1185331 (-)
G251631 NA non-coding upstream 267691 1267864 ~ 1268136 (-)
CI01000059_01275053_01276421 NA non-coding upstream 276163 1274776 ~ 1276569 (-)
CI01000059_00378673_00379901 NA other downstream 610894 378587 ~ 380137 (-)
CI01000059_01253451_01254823 NA other upstream 251543 1251716 ~ 1254823 (-)
CI01000059_02096875_02098872 CDC26 other upstream 1096524 2094279 ~ 2098985 (-)
G253013 NA other upstream 2471302 3471475 ~ 3471909 (-)
G253914 NA other upstream 3753365 4753538 ~ 4754082 (-)
G254203 NA other upstream 4237613 5237786 ~ 5238299 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location