CI01000059_01042330_01049708 (GNAQ, GNA11B, GNAQ.L, GNAQ.S, GNA11, GNA11.S)


Basic Information

Item Value
gene id CI01000059_01042330_01049708
gene name GNAQ, GNA11B, GNAQ.L, GNAQ.S, GNA11, GNA11.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1042250 ~ 1049927 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_01042330_01049708.mRNA
AAAGGATCTGTTGCTTTTGTGAGTGATCTAAAACACAGCTCAACCGCTTCAGGATTTCAGTCACTGACACATTTTGAATGCGGTTTGGATTCTCTCCTCAACGCGCTACAGGAAAACTCTTTCTCTTGCCTTATCTGAATGATTGCATTTGAGTTGGGACTGATGTTCTTTCAATGGAATTGCTGAAAAGCTCCTAATTGTAAATTGTCGCGGAGAATCATGACGCTGGACTCCATAATGGCGTGCTGCCTCAGCGAGGAGGCGAAAGAAGCTCGGCGGATCAACGATGAGATCGAGCGACAGCTCCGCCGTGACAAAAGAGATGCTCGGCGCGAGCTCAAACTGCTCCTGTTGGGAACTGGAGAGAGTGGGAAAAGCACTTTTATTAAACAGATGAGAATCATCCATGGCTCAGGCTATTCAGAAGAGGACAGGAGAAGCTTTACCAAGCTGGTCTACCAAAACATCTTCACATCTATGCAGTCCATGATACGAGCAATGGAAACTCTCCAGATCCTCTACAAGTATGAACATAATAAGGCCAATGCAAACATTGTCAGAGAAGTAGATGTAGAGAAGGTCTTCTTGTTCGTCAACCCCTATGTAGATGCCATCAAGAGTTTATGGAATGACCCAGGAATCCGGGAGTGTTATGACCGGAGGAGAGAATACCAGCTCTCAGATTCCACAAAATATTACCTAAATTCACTAGATCGCATTGCCAACCCTTCCTACATTCCCACCCAGCAAGATGTGCTTAGGGTGAGAGTGCCCACAACAGGCATCATTGAATACCCCTTCGACCTACATAGTGTCATATTCAGGATGGTGGATGTAGGGGGGCAGCGGTCAGAACGGCGGAAGTGGATCCACTGCTTTGAAAACGTCACCTCCATCATGTTCCTGGTAGCACTCAGTGAATATGACCAAGTTCTGGTCGAGTCTGACAATGAGAATCGAATGGAGGAAAGCAAAGCATTGTTTAGGACGATAATAACATACCCCTGGTTCCAGAATTCATCAGTTATTCTTTTTCTGAACAAGAAAGACCTTTTGGAAGAGAAAATAATGTTTTCACATCTTGTAGATTACTTTCCTGAATATGATGGAGCCCAGAGAGATGCTCAAGCCGCACGGGAATTCATCCTAAAAATGTTTGTCGACCTGAATCCAGACTCAGAAAAAATCATTTATTCTCATTTCACCTGTGCCACTGACACGGAAAACATCAGATTCGTGTTTGCTGCTGTCAAGGACACCATCTTGCAGCTCACACTGAAGGAATACAATCTAGTCTGAACAACGGCCGGTTTTGTCACTGTCTGGCCTGGTTAAAGGACTCATCCGTCTGCAGCTAGAGTCTGCTGTGGGCCATTAAA

Function

symbol description
gna11b Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; entrainment of circadian clock; and phototransduction, visible light. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane and photoreceptor outer segment. Predicted to be part of heterotrimeric G-protein complex. Is expressed in barbel; brain; gill; lip; and sensory system. Human ortholog(s) of this gene implicated in autosomal dominant hypocalcemia 2 and familial hypocalciuric hypercalcemia 2. Orthologous to human GNA11 (G protein subunit alpha 11).
gnaq Predicted to enable several functions, including G-protein beta/gamma-subunit complex binding activity; GTPase activator activity; and GTPase activity. Predicted to be involved in action potential and adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in gill and nervous system. Human ortholog(s) of this gene implicated in Sturge-Weber syndrome; congestive heart failure; and familial multiple nevi flammei. Orthologous to human GNAQ (G protein subunit alpha q).
gna11 Predicted to enable several functions, including G-protein beta/gamma-subunit complex binding activity; GTPase activity; and alkylglycerophosphoethanolamine phosphodiesterase activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; entrainment of circadian clock; and phototransduction, visible light. Predicted to act upstream of or within several processes, including cellular response to pH; regulation of melanocyte differentiation; and skeletal system development. Located in cytoplasm. Implicated in autosomal dominant hypocalcemia 2 and familial hypocalciuric hypercalcemia 2.

GO:

id name namespace
GO:0007596 blood coagulation biological_process

KEGG:

id description
K04634 GNAQ; guanine nucleotide-binding protein G(q) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_01042330_01049708.mRNA True 1379 mRNA 0.45 7 1042250 1049927

Neighbor

gene id symbol gene type direction distance location
CI01000059_01022397_01031991 NA coding downstream 10046 1021738 ~ 1032204 (-)
CI01000059_00991306_01000173 BMCC1, PRUNE2 coding downstream 42077 991031 ~ 1000173 (-)
CI01000059_00867492_00873239 NA coding downstream 169011 866665 ~ 873239 (-)
CI01000059_00853242_00855219 NA coding downstream 186966 852754 ~ 855284 (-)
CI01000059_00767393_00826328 NA coding downstream 215669 765733 ~ 826581 (-)
CI01000059_01062456_01073742 HNRPKL, HNRNPK coding upstream 12529 1062456 ~ 1073742 (-)
CI01000059_01118201_01130248 KCMF1, KCMF1.L, YOY6 coding upstream 67789 1117716 ~ 1130248 (-)
CI01000059_01144728_01188827 CAMK4.L, CAMK4 coding upstream 94197 1144124 ~ 1188827 (-)
CI01000059_01191120_01223818 WDR36 coding upstream 140477 1190404 ~ 1223818 (-)
CI01000059_01227965_01233051 SLC25A46 coding upstream 177400 1227327 ~ 1233860 (-)
G251593 NA non-coding downstream 68341 973553 ~ 973909 (-)
G251589 NA non-coding downstream 82813 959224 ~ 959437 (-)
G251587 NA non-coding downstream 86607 955404 ~ 955643 (-)
G251586 NA non-coding downstream 89890 952144 ~ 952360 (-)
G251583 NA non-coding downstream 102390 939642 ~ 939860 (-)
G251505 NA non-coding upstream 66422 1116349 ~ 1116684 (-)
G251510 NA non-coding upstream 126592 1176519 ~ 1185331 (-)
G251631 NA non-coding upstream 217937 1267864 ~ 1268136 (-)
CI01000059_01275053_01276421 NA non-coding upstream 226409 1274776 ~ 1276569 (-)
CI01000059_00378673_00379901 NA other downstream 662113 378587 ~ 380137 (-)
CI01000059_01253451_01254823 NA other upstream 201789 1251716 ~ 1254823 (-)
CI01000059_02096875_02098872 CDC26 other upstream 1046770 2094279 ~ 2098985 (-)
G253013 NA other upstream 2421548 3471475 ~ 3471909 (-)
G253914 NA other upstream 3703611 4753538 ~ 4754082 (-)
G254203 NA other upstream 4187859 5237786 ~ 5238299 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031486 gnaq coding NC_007116.7 CM002889.2 55588389 ~ 55600689 (-)