XLOC_001016 (BX004779.2)


Basic Information

Item Value
gene id XLOC_001016
gene name BX004779.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9157310 ~ 9162637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001614
cccttatcctccataAACAGCAAGGGTCTCAAGGCATTCGAAGAGCAGAAAAGGTGCCAAACACAATGTTGTCAGGGCACTCCATGATACTTCAGTGGTTCAAATAAAACCaaacgaagctccaagaacacttttgtgggGCAAAATAAAACTACAACCTACTAGCTTGACATTGGCCTGTTGTGCTGCTCGCTCTAATGGAAACACCGTAATGGCTGTTGTAAACGCGCACCTTCACGTGATTTGACattatgctgctttgtttacctcagtaaccaagGCCATATTTGTCAGAGTAGTCAACCCATTTACTAATCCAGAAGACAGGAATACAAGCAGGGTCTTCAGCTTCCTCTGTAAAAGtgtaaggggaaaaaaaaatatttgcaacaAGATTGTCAATTTGAGAACATGTAACCCTTTC

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0009799 specification of symmetry biological_process
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0035282 segmentation biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0046619 optic placode formation involved in camera-type eye formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0007399 nervous system development biological_process
GO:0048368 lateral mesoderm development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001614 True 424 lncRNA 0.42 2 9157310 9162637

Neighbor

gene id symbol gene type direction distance location
XLOC_001015 NA coding downstream 18150 9138638 ~ 9139160 (-)
XLOC_001014 palb2 coding downstream 23265 9132335 ~ 9134045 (-)
XLOC_001013 palb2 coding downstream 27174 9125023 ~ 9130136 (-)
XLOC_001012 ndufab1a coding downstream 33845 9118100 ~ 9123465 (-)
XLOC_001011 si:ch211-14k19.8 coding downstream 42276 9100447 ~ 9115034 (-)
XLOC_001017 ern2 coding upstream 7170 9169807 ~ 9195760 (-)
XLOC_001018 BX004779.1 coding upstream 35222 9197859 ~ 9197966 (-)
XLOC_001019 gng13a coding upstream 64444 9227081 ~ 9228007 (-)
XLOC_001020 si:dkeyp-57d7.4 coding upstream 67607 9230244 ~ 9231952 (-)
XLOC_001021 zgc:136472 coding upstream 72291 9234928 ~ 9249943 (-)
XLOC_001010 NA non-coding downstream 74538 9081842 ~ 9082772 (-)
XLOC_001009 NA non-coding downstream 176639 8978905 ~ 8980671 (-)
XLOC_001008 NA non-coding downstream 179347 8974500 ~ 8977963 (-)
XLOC_001002 NA non-coding downstream 532044 8612575 ~ 8625266 (-)
XLOC_001023 AL954703.1 non-coding upstream 145634 9308271 ~ 9321931 (-)
XLOC_001024 NA non-coding upstream 258187 9420824 ~ 9422275 (-)
XLOC_001031 NA non-coding upstream 753739 9916376 ~ 9918812 (-)
XLOC_001037 CR854964.1 non-coding upstream 1107610 10270247 ~ 10272725 (-)

Expression


Co-expression Network