XLOC_010162


Basic Information

Item Value
gene id XLOC_010162
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40873241 ~ 40893518 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022007
gtgagacacacacacgcacacagcacCCTCGCTCACGCTGTTATTCACTTACTTAAATTTATAAGCAGGCGATAGTACGTGACAGGCGTGCAATCTCACTGAGTAACCACAACACCTGCGACGCTTGAAGACATGATACTGACAGCGGTGGCGTGTGCTGAACTTCTGAAACGAGGAGCTACTGTTTTCAGTTTCTGGCTTAAATGGGAACATTGAAAACTATTTTTCTTGCATACAGGTCTACAAAATCTTGGACGCGGCCCGCATCCTGAGCAGATACTGTGGTGATCATGGAGGAGTAGGGAGCGTGAGACCCCAGAGACAGACGAATCCCCCTATTGATCCCGTGGGCTTAAACACTCAACGGTTTCCAGAAGCAGCCGAGGTGCATAATGAGCAGCGCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022007 True 406 lncRNA 0.50 3 40873241 40893518

Neighbor

gene id symbol gene type direction distance location
XLOC_010161 ccne2 coding upstream 286448 40575742 ~ 40586793 (+)
XLOC_010160 tp53inp1 coding upstream 303472 40560622 ~ 40569769 (+)
XLOC_010159 nagpa coding upstream 331260 40508882 ~ 40541981 (+)
XLOC_010158 BX072576.1 coding upstream 408815 40463365 ~ 40464426 (+)
XLOC_010157 BX072576.2 coding upstream 519163 40346447 ~ 40354078 (+)
XLOC_010163 NA coding downstream 48219 40941737 ~ 40945757 (+)
XLOC_010164 gbp coding downstream 60963 40954481 ~ 40955839 (+)
XLOC_010165 dek coding downstream 121645 41015163 ~ 41030634 (+)
XLOC_010166 NA coding downstream 143129 41036647 ~ 41054652 (+)
XLOC_010167 scap coding downstream 166643 41060161 ~ 41103782 (+)
XLOC_010153 NA non-coding upstream 534214 40131464 ~ 40339027 (+)
XLOC_010154 BX470182.2 non-coding upstream 689382 40183743 ~ 40183859 (+)
XLOC_010152 NA non-coding upstream 758434 40082902 ~ 40114807 (+)
XLOC_010151 CT025588.3 non-coding upstream 791185 40075545 ~ 40082056 (+)
XLOC_010168 NA non-coding downstream 235546 41129064 ~ 41129320 (+)
XLOC_010170 NA non-coding downstream 249141 41142659 ~ 41148163 (+)
XLOC_010173 BX005012.4 non-coding downstream 571993 41465511 ~ 41473318 (+)

Expression


Co-expression Network