XLOC_010165 (dek)


Basic Information

Item Value
gene id XLOC_010165
gene name dek
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41015163 ~ 41030634 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020155
tCAGCGTGGTCACGTGACGGCCCGCCCTCTATTTTCAAACGCCATGTTTACTGCGCACCTCCATCACTTCCAATCGGCGCAACAGTAACGTACAGATGCACCTGAGAAAGTCTGTTCCTCAGTGAAGAAATGGAAGCTATCAAGACAGAAGTACATCCTTTGGATGATGCAGAGCAGGATGAATCAGAGGAATCCTCACCCAAAACCACGTCTAAACCCAAAGTCAAAATGTTTGAACTGGAAATCGTTGAAGGAAAACGTGAGAAAAAGGTCATCCAGAGACTTGATATGATGAGTAAACCAAAGGAAAAGCCGAAGATTGAGAGCAAAGGAAGAGGCGACAAGCTGGGAGACATTGCACGAATTAACCACTCCATTGGGAAGCTTAAAGCTCCTTTGCTCAAACCGCTGCATAAGATCCTATATGATCGACCAGGGGCTGCATCAACACTGCGGAAAAATCTGCGGCTCTTTAATGGATTTCCCTTTAAAGAGGACAGTGACCTTTACAACAAAAAGATGGAGAAGGTGAAAAGGCTTCCCAAGAAACTGCTCAAAACCATCTGTCAGACTCTTGATCTGGAGAGGAGTGGAACACAAATTGTTCTCTCAGAGAGGATTATGAAGTTTCTCGCACAGCCAACCAACTCGGGAAAGCCTGTCctgaagaaaaaaaggaagaCGACCAAAGATGGCAAAAAAGAAAAGTCTTCATCCAAGAGCAAAAAGCCACACAAAAAAGTAGTAAGTGGAAAGTCCAAACCCATTGTCACAGATTCCagtagtgatgatgatgatgacgatgaggATGACGACGACGGTGAAGAAGAGACCAAAGGGAAGAGCAAGGGCACTGAGAAGTCTGCAAAAGCAAGTCAAAAACATGATGATAGTGAAGATAAATCTGATATAGAGGAAGAGGATGAGTCCtcggatgatgatgatgacgacgacaaTGATGATGATTCTAAAGAGGATAGCAAGGAGGAAACATCTCCTCCTCAGAAGAAATCTTCCACTGGGAAGTCCACAAAGAAATCTGACAAGAAGTCTGATCAGAGTCCATCAGATGAGACAACCGATGACAGTGACACATATTGTGAAGACAAGGATGCAAAAAAGACAAAAAAGAAGCCTGCAGCAAAGAGAAAAGCTCCAGCAAAGCCTGTCCCGAAAACTAAGAAAGCAGACAGCAGCAGCAACCGAAAGAAAAAGACTGCAAGCAAGAGAAAAGATGAAAGCGAAAGCTCTGATGACGATCAACCTTTGATCAAAATGATCAAAAAACCACCAACAGATGAGCAGTTGAAGGAGAACGTAAAAGACCTCCTGAAAGACGCAAACCTGGAGGAGGTTACAATGAAGCAGATAACCCGACAAGTTTATGACAAGTATCCTGACTTCGATCTGAGCAGCAGAAAGGAATTTATTCGTGAGACTGTTAAAAATATGATATCCTGAAGTGATGAGAAGAAAATGCCTTATTTAAAAAAGTCGACTAGAGTGAAGTTGGTGGATGAATATTCATTGCACTGTTCACTGTTCTgtagttttatgtttattttatacaaGTTcagcttttttgtattttaaagagtCTTTTAAAGTTAGAGTTTTGACAATTGACAGCAAATGATGTGGATTTTGGTTGTTGAAATATGccacatttttaaagtaattttagttTCATAATTTATATGGCACGTGGCCATACAAACTtaaccatattttattttgaccaGAAATTCACAGTTTGTTTGTGCTAGAAAAGCCTGCAGTATGATTAGCATGAATTTGTTGATGCTAAGATACTGCAGGCATGTTTTAGAAAGTGTTCATTTTATGGATTGATTTTATCCATTATTAACGCTGGTTTCAGTTTTGAAGGTTTGAATGTCGATTGCAAAAACAAGGTAATTTAGATTAAATCTGTCTGGTTTTTGGTTTCAACATCTTATGTTGTGCAGTGTTGGTTTACATCTCAGTGCTTTGCATAATAGTAGTGTCCAAACTCATTCCTGAAGGgtcgatgtcctgcagattttagctccaacatgcTTCAACACATCTGACAGGAAGTTTTTAGCATatccagtaagagcttgattatctgcttcaggtgtgtttgattagggttggcgctaaactctgcaggacaccggatctccaggactgagtttggacactcgTGGCATAATAGAAGAATTTGGTATTTTAATGCTAATGTGTTAAAAGCAAAaagctttaagttttttttttctttgtaaatatGCTCTTTAAGTGTATTTTACTTGCTTGTGTCTTAAATCAAGTCATACGAAGCAAACAAATCATAATTCTGTGATGTTACACATTCATATCAGCAGGTCAGAAATGTAGTTTAGGTCCCATAGTAAGACCAGATTTGATCTGTTGTAAACACTGACCTCAGTAACCAGTTATCAATTATTATCAGTCATAATACTCAATGATAGTCTGTCACAAAAACATCAAAACAGAAATGAAAAcgtgtttattttgtaataaatagatttttcataATA
>TCONS_00020156
GAATTATATAAGGTTATTTTGCCGTACAGTATTAGTTTGATAACTCCGCCCCCTCCAGTACGTATTTATAGCTGCGACAGTTGTCCAAAAATGTCCAACATTGTTTAGTATATACGTCTCTGCATTCTGCATGTTCCACAATCAGTCATAAAAGAGGTGGATACATTTTTGTTCAATTTCATATTTGGTGGAACAgaccacattatttaaaaaagacagTGTTGTACAATCCAGTTGAAGATGTGGTCTCAATGTTCTTGATGTCAGCACTGCTGTAAGTGTATTTAAAACAAATGGATTCAGAATTACCTGAATTTTAAAGGATGCACCTGAGAAAGTCTGTTCCTCAGTGAAGAAATGGAAGCTATCAAGACAGAAGTACATCCTTTGGATGATGCAGAGCAGGATGAATCAGAGGAATCCTCACCCAAAACCACGTCTAAACCCAAAGTCAAAATGTTTGAACTGGAAATCGTTGAAGGAAAACGTGAGAAAAAGGTCATCCAGAGACTTGATATGATGAGTAAACCAAAGGAAAAGCCGAAGATTGAGAGCAAAGGAAGAGGCGACAAGCTGGGAGACATTGCACGAATTAACCACTCCATTGGGAAGCTTAAAGCTCCTTTGCTCAAACCGCTGCATAAGATCCTATATGATCGACCAGGGGCT

Function

symbol description
dek Predicted to enable histone binding activity. Predicted to be involved in regulation of double-strand break repair. Predicted to be active in nucleus. Orthologous to human DEK (DEK proto-oncogene).

GO:

id name namespace
GO:2000779 regulation of double-strand break repair biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060512-191 Predicted to enable histone binding activity. Predicted to be involved in regulation of double-strand break repair. Predicted to be active in nucleus. Orthologous to human DEK (DEK proto-oncogene).

Ensembl:

ensembl_id ENSDARG00000070108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020155 False 2543 mRNA 0.39 11 41015163 41030634
TCONS_00020156 True 669 mRNA 0.40 3 41015781 41021830

Neighbor

gene id symbol gene type direction distance location
XLOC_010164 gbp coding upstream 59324 40954481 ~ 40955839 (+)
XLOC_010163 NA coding upstream 69406 40941737 ~ 40945757 (+)
XLOC_010162 NA coding upstream 121645 40873241 ~ 40893518 (+)
XLOC_010161 ccne2 coding upstream 428370 40575742 ~ 40586793 (+)
XLOC_010160 tp53inp1 coding upstream 445394 40560622 ~ 40569769 (+)
XLOC_010166 NA coding downstream 6013 41036647 ~ 41054652 (+)
XLOC_010167 scap coding downstream 29527 41060161 ~ 41103782 (+)
XLOC_010168 NA coding downstream 98430 41129064 ~ 41129320 (+)
XLOC_010169 si:ch211-53m15.2 coding downstream 104384 41135018 ~ 41136139 (+)
XLOC_010170 NA coding downstream 112025 41142659 ~ 41148163 (+)
XLOC_010157 BX072576.2 non-coding upstream 661085 40346447 ~ 40354078 (+)
XLOC_010153 NA non-coding upstream 676136 40131464 ~ 40339027 (+)
XLOC_010173 BX005012.4 non-coding downstream 434877 41465511 ~ 41473318 (+)
XLOC_010175 BX005012.2 non-coding downstream 516129 41546763 ~ 41548437 (+)

Expression


Co-expression Network