XLOC_010166


Basic Information

Item Value
gene id XLOC_010166
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41036647 ~ 41054652 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022009
CAGAACACTAGAGACTCACAGCTACCTGCCTGCTGCAGCTCAACGAGAGCAATTCGCTGTTAATAAAAGCCCTCGAAGAGAAAGAGAAGCACCCGCCATTAGGATCCCTTGATGCCCGCCGGTGCCCTCGCCCTGGCCGCACACGCAGACTCGATGGCCATCAGCTGACCCCCGCGCCCAGGATGACGGTGAGAGAGCGGCTTCGGCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTATGCGCCTCATACCCGGTTCCCATCATTCTCTTCACCTCTGCCAGCATCCTGACCTGCTGACATCTTCTCTGAAGAAGAAATCTTCCACTGGGAAGTCCACAAAGAAATCTGACAAGAAGTCTGATCAGAGTCCATCAGATGAGACAACCGATGACAGTGACACATATTGTAAAGACAAGGATGCAAAAAAGCAAAGAGAAAAGCTCCAGCAAACCTGTCCCGAAAACTAAGAAAGCAGACAGCAGCAGCAATCGAAAGAAAAAGACAACAAGCAAGAGGATGAAAGCAAAAGCTCTGATGAcgatcaacctttgatcaagaTGATCAAAAAACCACCAACAGATGAGCAGTTGAAGGAGAACGTAAAAGACCTCCTGAAAGACGCAAAGCTGGAGGAGGTTACAATGAAGCAGATAACCCGACAAGTTTATGACAAGTATCCTGACTTCAATCTGAGCAGCAGAAAGAAATTCATTCGTGAGACTGTTAAAAATATGATATCCTGAAGTGATGAGAAGAAAATGCCTTATTTACAAAAGTCGACTAGAGTGAAGTTGGTGGATGAATTTTTGTTGCACTGTTCACTGTTCtgtaattttatgtttattttatacaaGTTcagcttttttgtattttaaagagtCTTTTAAAGTTAGAGTTTTGACAATTGACAGCAGTTTCACATAGTTTTGCTTTTTAAGTGACTTGCATAAAGAAGAAGGGTCGCATGAATTTAAACTTGCACTGCAAAAATTGATTCTGGTTTTATAGTCATTAAGAAGTTATAGAACAAACTGAATCCTCATTATTCATCCTGCTCTGCCCTATGGAAGCTTGCTATGGGTCTTCAGTGTATAGGCCTACTACTAATAGTTCTAAAAATCGGTTAATATTCTGAACGTGCTTTCTTTTAGAAAAAATCTCATTCCCTAAAcaggaatcgaacccgggtcgaatcctaaccactagaccaccagcgAGCGCGATGTGACATTTAAACATGTTAAGCTTAAGAAGATAGAGCAAT
>TCONS_00020157
CGCCCAGGATGACGGTGAGAGAGCGGCTTCGGCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTATGCGCCTCATACCCGGTTCCCATCATTCTCTTCACCTCTGCCAGCATCCTGACCTGCTGACATCTTCTCTGAAGAAGAAATCTTCCACTGGGAAGTCCACAAAGAAATCTGACAAGAAGTCTGATCAGAGTCCATCAGATGAGACAACCGATGACAGTGACACATATTGTAAAGACAAGGATGCAAAAAAGCAAAGAGAAAAGCTCCAGCAAACCTGTCCCGAAAACTAAGAAAGCAGACAGCAGCAGCAATCGAAAGAAAAAGACAACAAGCAAGAGGATGAAAGCAAAAGCTCTGATGAcgatcaacctttgatcaagaTGATCAAAAAACCACCAACAGATGAGCAGTTGAAGGAGAACGTAAAAGACCTCCTGAAAGACGCAAAGCTGGAGGAGGTTACAATGAAGCAGATAACCCGACAAGTTTATGACAAGTATCCTGACTTCAATCTGAGCAGCAGAAAGAAATTCATTCGTGAGACTGTTAAAAATATGATATCCTGAAGTGATGAGAAGAAAATGCCTTATTTACAAAAGTCGACTAGAGTGAAGTTGGTGGATGAATTTTTGTTGCACTGTTCACTGTTCtgtaattttatgtttat
>TCONS_00022010
AAATAGTCCGGACTGCTGAATGAATCACTGGtactacccttcctacacttcaagaactgtactcttccagagtgagtaaaagggctcgcaaaattACTCTGGACActtcgcacccagcacactacctgatcaaactgttaccgtctggtcggcgcttcagagcatcaagcacaaaaacagccagacacagtaaacattctttcctcaggccattacCTCATGAACAGGTACATATTCCTcaactgtgcaataaacatgcaaaactttctcatacgcacttgtacacagcaccttatatcaatatacaatgcaatactttctccataCACATTTGCACACAGCAccgtataacctgtatatttataacaaatctgtacatacaattcaacatccagatttcttgactaactgcatctctgtttaatgtttatcgtatttcttttttccatatttattttgtgttgtcactttatgtacactggaagcttctgtagacaaaacaaattccttgtgtgtgtgaagcacacttggcaataaaactgattctgattctgaaaaaGACAAGTAATTTATTGCATGCGTTTAGCCTGTTTCTTTTGTATTAATACCGGTTTCCTTCATCACAGAATATATAGACTCTGTTATGTCAAAATTTGACAAGTTAAAATTATTCCAGATCCTGCTGTGATCTATGAACTTTCTGTTTGTTGTAGGTTTATGACAAGTATCCTGACTTCAATCTGAGCAGCAGAAAGAAATTCATTCGTGAGACTGTTAAAAATGTAAGTGCAttcaaaatgctaatttattttaatattcatttgtatAATAGTCGGCTTTTAACATGGCTAATGTTCTTGCTTTTCAGATGATATCCTGAAGTGATGAGAAGAAAATGCCTTATTTACAAAAGTCGACTAGAGTGAAGTTGGTGGATGAATTTTTGTTGCACTGTTCACTGTTCtgtaattttatgtttattttatacaaGTTcagcttttttgtattttaaagagtCTTTTAAAGTTAGAGTTTTGACAATTGACAGCAGTTTCACATAGTTTTGCTTTTTAAGTGACTTGCATAAAGAAGAAGGGTCGCATGAATTTAAACTTGCACTGCAAAAATTGATTCTGGTTTTATAGTCATTAAGAAGTTATAGAACAAACTGAATCCTCATTATTCATCCTGCTCTGCCCTATGGAAGCTTGCTATGGGTCTTCAGTGTATAGGCCTACTACTAATAGTTCTAAAAATCGGTTAATATTCTGAACGTGCTTTCTTTTAGAAAAAATCTCATTCCCTAAAcaggaatcgaacccgggtcgaatcctaaccactagaccaccagcgAGCGCGATGTGACATTTAAACATGTTAAGCTTAAGAAGATAGAGCAAT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092062

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022009 False 1272 lncRNA 0.43 7 41036647 41054652
TCONS_00020157 False 678 unprocessed_pseudogene 0.44 6 41042310 41054232
TCONS_00022010 True 1401 lncRNA 0.36 1 41053252 41054652

Neighbor

gene id symbol gene type direction distance location
XLOC_010165 dek coding upstream 6013 41015163 ~ 41030634 (+)
XLOC_010164 gbp coding upstream 80808 40954481 ~ 40955839 (+)
XLOC_010163 NA coding upstream 90890 40941737 ~ 40945757 (+)
XLOC_010162 NA coding upstream 143129 40873241 ~ 40893518 (+)
XLOC_010161 ccne2 coding upstream 449854 40575742 ~ 40586793 (+)
XLOC_010167 scap coding downstream 5509 41060161 ~ 41103782 (+)
XLOC_010168 NA coding downstream 74412 41129064 ~ 41129320 (+)
XLOC_010169 si:ch211-53m15.2 coding downstream 80366 41135018 ~ 41136139 (+)
XLOC_010170 NA coding downstream 88007 41142659 ~ 41148163 (+)
XLOC_010171 sc:d156 coding downstream 108202 41162854 ~ 41169589 (+)
XLOC_010157 BX072576.2 non-coding upstream 682569 40346447 ~ 40354078 (+)
XLOC_010153 NA non-coding upstream 697620 40131464 ~ 40339027 (+)
XLOC_010173 BX005012.4 non-coding downstream 410859 41465511 ~ 41473318 (+)
XLOC_010175 BX005012.2 non-coding downstream 492111 41546763 ~ 41548437 (+)
XLOC_010183 BX649388.2 non-coding downstream 1011930 42066582 ~ 42073705 (+)
XLOC_010154 BX470182.2 non-coding upstream 852788 40183743 ~ 40183859 (+)

Expression


Co-expression Network