XLOC_010167 (scap)


Basic Information

Item Value
gene id XLOC_010167
gene name scap
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41060161 ~ 41103782 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020158
CAGAACACTAGAGACTCACAGCCACCTGCCTGCTGCAGCTCAACGAGAGCTATTCACTGTTAATAAAAGCCCTCGAAGAGGAAGAGAAGCACCCGCCATTAGGATCCCTGGATGCCCGGCGGTGCCCTCGCCCTGGCCGCACACGCAGACTCGATGGCCATCAGCTGACCCCCGCGCCCAGGATGACGGTGAGAGAGCGGCTTCGGCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTATGCGCCTCATACCCGGTTCCCATCATTCTCTTCACCTCTGCCAGCATCCTGACCTGCTGTTACCCTCTGCTGAAGCTGCCTCTACCAGGAACGGGGCCTGTGGAGTTCACCACTGGAGTACGAGATTACTCGATCCCATCCCATGAGTCTCAGGGGGACCTGTCAGAGCGACCGGATTGGTATCGGGGACCTCCAGTGGCCTACATCCAGCAGGTGTTGGTCAAGGCAGCGGTTTCACCATGGGGCAACAGTTTGGTCCCTGTGGACGTGTTTCGCTCTCCTCTTGGTCGAGTTTTCAGCCTTTTGGATGAGATCAGAAACCACGTTTACACGGACAGAAGTTTGGAGGCGCTGTGTTTGCAGGTGACAGATTTGTTGCCAGGTTTGCGGCGCATGCAGGCGGTCCTTCCAGAGCACGGCTGTCTGCTGGTGTCCCCTGGCAACTATTGGCAGAACCGGCGTGACCTGTTTGATGCTGATCCAGACCTCCTGAAGACAGTCCACCAACATGAACCCAAAGGCCTTCATACCTCAGCCACTCTTAGAGATTTACTCTTTGGCGTCCCAGGGAAGCAGACGGGTGTTAGCTTGTATAGCAAGAAGAGAGTGGTGACATACACCGTCACAATTGCACTAAGCTCCTATGATGCAAGGTTTGTAGGCAGTCTTCGAGCACGTCTGAAGCAGCTTCATCCATCAGCAAACTGTACTCTGCGTGAAGACCACATGGTGCACGTCCATTTTAAAGAAGAGATTGGCATCGCTGAGCTCATCCCTTTAGTCACAACCTACATCATCTTGTTTGCTTATATCTACTTCTCCACACGAAAGATTGACATGGTGAGGTCAAAATGGGGTTTGGCGCTGGCTGCGGTGGTGACGGTCCTCAGCTCTCTACTCATGTCAGTGGGACTCTGCACCTTGTTTGGCCTCACACCTACACTGAACGGAGGGGAAATCTTCCCCTACCTTGTGGTGGTAATTGGTTTGGAGAATGTTCTAGTCCTCACCAAGTCTGTCGTGTCAACGCCTGTCGACCTTGAAGTCAAACTGCGTATCGCTCAAGGTCTGAGCAACGAGAGCTGGTCAATCATGAAGAATATGGCCACTGAGCTGTGCATCATCCTCATTGGATACTTCACATTTGTCCCAGCTATTCAGGAGTTCTGTCTGTTTGCTGTGGTGGGTCTGGTGTCCGATTTCTTCCTTCAGATGTTTTTCTTCACCACTGTGCTGTCTATTGACATCCGCCGCATGGAGTTGGCTGATCTCAACAGACGTCTGCCAGCAGAAGCAGGGATGCCTCCTCCTAAACCGGGCACTTTACGTCCCCGGGAGACGCCTCCACCACCTCGTCCCTCACCACACACCATCACTCTGCAGACTCCAGCGTTTCGCAACCTCCGCTTGCCCAAGAGGCTGAGGGTGGTGTATTTCTTAGCCCGCACTCGCCTGGCACAGCGGATTATTATGGTTGGCACTGTAATCTGGATTGGAATCTTGGTCTACACTGACCCTGCTGGTCTGAGGACTTTCCTTGCAGCCCAAGTATCCGAGCAGAGTCCTCTTGGAGAGGCAGGGCTTCCTCCTCACCTGGGTGTTGCTCCAGTATTTCCCGGCGGACACCCGACCAGCACACTGAGCGTCCTCCCTGCCCCTGAACCCACTCCTCTTCCCGAAAACCAGTCCCAGGGCCACCGAGCAGCCCGTCCAGGAGTCGCCCCCGTCTCAAGCCCTCAGATCACCTGGGGCTCCGAAGATGAGGAGCTGTGGAGGAGGCTTTCTTTCCGCCACTGGCCCTCACTCTTCAGCTATTACAACATCACTCTTGCAAAAAGGTACATCAGCATTCTTCCAGTCATCCCCGTGACGCTTCATCTGAGCCCACAGGAGGCCATAGACACTCGGCACCCGCAGGACACACAGCacgctcctcctcctcctcccagcATCAAGACTTCTGATCTGCAGACGGACCTCACACTCTACAAagtGGCAGCTCTTGGGCttttcgctggtgttttgctgGTGCTCTTACTCTTCTGTCTGTATCGTGTGCTCTGCCCTCGAAACTATGGGCAGAACGGTGTGCCCCATGGCCGTCGTCGTCGTGGAGACCTGCCCTGCGATGAGTACGGATATTCACCCCCCATCAGTGAAATTTCCCCTCTGCTGCTGAGAGGTCACAGTATGGACATTGAGTGTCTGGCCAGTGATGGCATGCTGCTGGCCAGCTGTTGCCTGGCAGGACAGATCCGTGTATGGGACGCACAGACTGGAGACTGTCTCACTGTTATACCCAACAAAGGCCTGCGCAGGAGCAGCAGCAACGGTTGTTGGGAGCACCGTGATGGCTGGGATCACATCAGTGCTTTTGAAGTAGAGGGAATAGCTACAGACTTTCGAGAACCAGGAGGAGCGATGGGAGGCCCAGATGTAGATATTTTCGCTATAAGGAGGAGGACCACCCCTGCTCGTCCTGCACTGTTTGGAGACCAACCAGACCTCACGCCTCTCATCGACACCAACTTCGGGGCGCTGCCTCCATCTCAGGCCCTGAGCGGCTCTGGCTTTGACTTTGGGAGTTTGGTGGAGAAAGCGTACCAGGAGCATGAGCCCTCTCCAGTGTTGGTCTTCCCTCCGTCTCCTCCAGCCTCACAGCAGAGACGCCGCAGCCTCGGGGATCAGCCGGTCCTGCCTCCTGAGCTCCCTCCACAGAGCAGTGCAGACTGGGACAGCTCAGTGTGGGCCATGGAGCTCAGGGGGAACCTCATTGCTACGGGCCGCAGCACTGGAAAATTGGAGCTGTGGGATGCAGTAGAGGGATCTTTACGGTGCAGTAATGAAGATGGAGTTTCTGGAATTACAGCCTTGGCTTTTCTTAACAACAGAATTGTTGCAGCCCGATTAAATGGCTCACTGGATTTTTTCACAGTGGAGATCAACAAGCCACTCGGGTTGCTGCAATATCGAGGACCACCAGGCCGAGGTAGTCTACCACCGTCCCCCTGTTACAGCAGCGAGGATGTAATCAGCTGTCATCTCACTCGCTCAGTACAGTGTGCCCATCAGAAACCCATCACTGTGCTGAAAGCTGCTGCTGGCAGAGTGGTCACCGGCAGCCAGGACCATACAGTCAGGGTGTATCGTTTGGAGGATTCTTGTTGCCTCTTCACCCTGCAGGGCCACTCAGGTGGTATAACCGCCATCTACATAGACCAGACTATGGTTCTAGCCAGTGGAGGCCAAGATGGAGCCATCTGCGTGTGGGATGTCCTAACAGGCAGCCGGGTGAGCCACGTGTACGGTCATCGTGGTGATGTCACCTCACTGGTTTGCACAACATCCTGCATCATTAGCAGCGGTTTGGATGACCTCATTTGCATTTGGGACCGAAGCACAGGCATTAAGCTGTACTCAATACAACAGGAGGTGGGATGTGGGGCCAGTCTGGGGGTGATTTCTGAAAATCTGCTGGTGACCGGAGGACAAGGCTGCGTGTCATTTTGGGACCTGAACTATGGGGACCTGCTGCAGACGGTGTACCTGGGGCCGAGCAGTGAAGGTCAGAGCGTCCGGCAGCTCCTGGTTTTGGACAACGCCGCCATCATCTGTGACTTTGGTAGCGAGCTCAGTCTGGTCTATGTGCCCTCTGTTCTGGAGAAGCTGgactgagcacaaacacacatgaacagcAGCCTG
>TCONS_00020159
ATGACGGTGAGAGAGCGGCTTCGGCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTATGCGCCTCATACCCGGTTCCCATCATTCTCTTCACCTCTGCCAGCATCCTGACCTGCTGTTACCCTCTGCTGAAGCTGCCTCTACCAGGAACGGGGCCTGTGGAGTTCACCACTGGAGTACGAGATTACTCGATCCCATCCCATGAGTCTCAGGGGGACCTGTCAGAGCGACCGGATTGGTATCGGGGACCTCCAGTGGCCTACATCCAGCAGGTGTTGGTCAAGGCAGCGGTTTCACCATGGGGCAACAGTTTGGTCCCTGTGGACGTGTTTCGCTCTCCTCTTGGTCGAGTTTTCAGCCTTTTGGATGAGATCAGAAACCACGTTTACACGGACAGAAGTTTGGAGGCGCTGTGTTTGCAGGTGACAGATTTGTTGCCAGGTTTGCGGCGCATGCAGGCGGTCCTTCCAGAGCACGGCTGTCTGCTGGTGTCCCCTGGCAACTATTGGCAGAACCGGCGTGACCTGTTTGATGCTGATCCAGACCTCCTGAAGACAGTCCACCAACATGAACCCAAAGGCCTTCATACCTCAGCCACTCTTAGAGATTTACTCTTTGGCGTCCCAGGGAAGCAGACGGGTGTTAGCTTGTATAGCAAGAAGAGAGTGGTGACATACACCGTCACAATTGCACTAAGCTCCTATGATGCAAGGTTTGTAGGCAGTCTTCGAGCACGTCTGAAGCAGCTTCATCCATCAGCAAACTGTACTCTGCGTGAAGACCACATGGTGCACGTCCATTTTAAAGAAGAGATTGGCATCGCTGAGCTCATCCCTTTAGTCACAACCTACATCATCTTGTTTGCTTATATCTACTTCTCCACACGAAAGATTGACATGGTGAGGTCAAAATGGGGTTTGGCGCTGGCTGCGGTGGTGACGGTCCTCAGCTCTCTACTCATGTCAGTGGGACTCTGCACCTTGTTTGGCCTCACACCTACACTGAACGGAGGGGAAATCTTCCCCTACCTTGTGGTGGTAATTGGTTTGGAGAATGTTCTAGTCCTCACCAAGTCTGTCGTGTCAACGCCTGTCGACCTTGAAGTCAAACTGCGTATCGCTCAAGGTCTGAGCAACGAGAGCTGGTCAATCATGAAGAATATGGCCACTGAGCTGTGCATCATCCTCATTGGATACTTCACATTTGTCCCAGCTATTCAGGAGTTCTGTCTGTTTGCTGTGGTGGGTCTGGTGTCCGATTTCTTCCTTCAGATGTTTTTCTTCACCACTGTGCTGTCTATTGACATCCGCCGCATGGAGTTGGCTGATCTCAACAGACGTCTGCCAGCAGAAGCAGGGATGCCTCCTCCTAAACCGGGCACTTTACGTCCCCGGGAGACGCCTCCACCACCTCGTCCCTCACCACACACCATCACTCTGCAGACTCCAGCGTTTCGCAACCTCCGCTTGCCCAAGAGGCTGAGGGTGGTGTATTTCTTAGCCCGCACTCGCCTGGCACAGCGGATTATTATGGTTGGCACTGTAATCTGGATTGGAATCTTGGTCTACACTGACCCTGCTGGTCTGAGGACTTTCCTTGCAGCCCAAGTATCCGAGCAGAGTCCTCTTGGAGAGGCAGGGCTTCCTCCTCACCTGGGTGTTGCTCCAGTATTTCCCGGCGGACACCCGACCAGCACACTGAGCGTCCTCCCTGCCCCTGAACCCACTCCTCTTCCCGAAAACCAGTCCCAGGGCCACCGAGCAGCCCGTCCAGGAGTCGCCCCCGTCTCAAGCCCTCAGATCACCTGGGGCTCCGAAGATGAGGAGCTGTGGAGGAGGCTTTCTTTCCGCCACTGGCCCTCACTCTTCAGCTATTACAACATCACTCTTGCAAAAAGGTACATCAGCATTCTTCCAGTCATCCCCGTGACGCTTCATCTGAGCCCACAGGAGGCCATAGACACTCGGCACCCGCAGGACACACAGCacgctcctcctcctcctcccagcATCAAGACTTCTGATCTGCAGACGGACCTCACACTCTACAAagtGGCAGCTCTTGGGCttttcgctggtgttttgctgGTGCTCTTACTCTTCTGTCTGTATCGTGTGCTCTGCCCTCGAAACTATGGGCAGAACGGTGTGCCCCATGGCCGTCGTCGTCGTGGAGACCTGCCCTGCGATGAGTACGGATATTCACCCCCCATCAGTGAAATTTCCCCTCTGCTGCTGAGAGGTCACAGTATGGACATTGAGTGTCTGGCCAGTGATGGCATGCTGCTGGCCAGCTGTTGCCTGGCAGGACAGATCCGTGTATGGGACGCACAGACTGGAGACTGTCTCACTGTTATACCCAACAAAGGCCTGCGCAGGAGCAGCAGCAACGGTTGTTGGGAGCACCGTGATGGCTGGGATCACATCAGTGCTTTTGAAGTAGAGGGAATAGCTACAGACTTTCGAGAACCAGGAGGAGCGATGGGAGGCCCAGATGTAGATATTTTCGCTATAAGGAGGAGGACCACCCCTGCTCGTCCTGCACTGTTTGGAGACCAACCAGACCTCACGCCTCTCATCGACACCAACTTCGGGGCGCTGCCTCCATCTCAGGCCCTGAGCGGCTCTGGCTTTGACTTTGGGAGTTTGGTGGAGAAAGCGTACCAGGAGCATGAGCCCTCTCCAGTGTTGGTCTTCCCTCCGTCTCCTCCAGCCTCACAGCAGAGACGCCGCAGCCTCGGGGATCAGCCGGTCCTGCCTCCTGAGCTCCCTCCACAGAGCAGTGCAGACTGGGACAGCTCAGTGTGGGCCATGGAGCTCAGGGGGAACCTCATTGCTACGGGCCGCAGCACTGGAAAATTGGAGCTGTGGGATGCAGTAGAGGGATCTTTACGGTGCAGTAATGAAGATGGAGTTTCTGGAATTACAGCCTTGGCTTTTCTTAACAACAGAATTGTTGCAGCCCGATTAAATGGCTCACTGGATTTTTTCACAGTGGAGATCAACAAGCCACTCGGGTTGCTGCAATATCGAGGACCACCAGGCCGAGGTAGTCTACCACCGTCCCCCTGTTACAGCAGCGAGGATGTAATCAGCTGTCATCTCACTCGCTCAGTACAGTGTGCCCATCAGAAACCCATCACTGTGCTGAAAGCTGCTGCTGGCAGAGTGGTCACCGGCAGCCAGGACCATACAGTCAGGGTGTATCGTTTGGAGGATTCTTGTTGCCTCTTCACCCTGCAGGGCCACTCAGGTGGTATAACCGCCATCTACATAGACCAGACTATGGTTCTAGCCAGTGGAGGCCAAGATGGAGCCATCTGCGTGTGGGATGTCCTAACAGGCAGCCGGGTGAGCCACGTGTACGGTCATCGTGGTGATGTCACCTCACTGGTTTGCACAACATCCTGCATCATTAGCAGCGGTTTGGATGACCTCATTTGCATTTGGGACCGAAGCACAGGCATTAAGCTGTACTCAATACAACAGGAGGTGGGATGTGGGGCCAGTCTGGGGGTGATTTCTGAAAATCTGCTGGTGACCGGAGGACAAGGCTGCGTGTCATTTTGGGACCTGAACTATGGGGACCTGCTGCAGACGGTGTACCTGGGGCCGAGCAGTGAAGGTCAGAGCGTCCGGCAGCTCCTGGTTTTGGACAACGCCGCCATCATCTGTGACTTTGGTAGCGAGCTCAGTCTGGTCTATGTGCCCTCTGTTCTGGAGAAGCTGgactga

Function

symbol description
scap Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0032933 SREBP signaling pathway biological_process
GO:0019915 lipid storage biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032934 sterol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040107-41 Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

Ensembl:

ensembl_id ENSDARG00000018096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020158 False 3947 mRNA 0.55 23 41060161 41103782
TCONS_00020159 True 3738 mRNA 0.55 22 41067586 41103755

Neighbor

gene id symbol gene type direction distance location
XLOC_010166 NA coding upstream 5509 41036647 ~ 41054652 (+)
XLOC_010165 dek coding upstream 29527 41015163 ~ 41030634 (+)
XLOC_010164 gbp coding upstream 104322 40954481 ~ 40955839 (+)
XLOC_010163 NA coding upstream 114404 40941737 ~ 40945757 (+)
XLOC_010162 NA coding upstream 166643 40873241 ~ 40893518 (+)
XLOC_010168 NA coding downstream 25282 41129064 ~ 41129320 (+)
XLOC_010169 si:ch211-53m15.2 coding downstream 31236 41135018 ~ 41136139 (+)
XLOC_010170 NA coding downstream 38877 41142659 ~ 41148163 (+)
XLOC_010171 sc:d156 coding downstream 59072 41162854 ~ 41169589 (+)
XLOC_010172 nek11 coding downstream 68167 41171949 ~ 41296829 (+)
XLOC_010157 BX072576.2 non-coding upstream 706083 40346447 ~ 40354078 (+)
XLOC_010153 NA non-coding upstream 721134 40131464 ~ 40339027 (+)
XLOC_010173 BX005012.4 non-coding downstream 361729 41465511 ~ 41473318 (+)
XLOC_010175 BX005012.2 non-coding downstream 442981 41546763 ~ 41548437 (+)
XLOC_010183 BX649388.2 non-coding downstream 962800 42066582 ~ 42073705 (+)

Expression


Co-expression Network