CI01000059_06560307_06561286 (GSX1)


Basic Information

Item Value
gene id CI01000059_06560307_06561286
gene name GSX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6559784 ~ 6561450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_06560307_06561286.mRNA
AGTACCGCCTCTTGCAGTGTGGGTGGGGCTGACAAGAATAGACTACATTATGCAGTTCATTTAGTTAACAAGTGAAATAATAGGGAAGCGTGCAGAGTGAATGCCGAGAGAAAAGGCACAAAACCCTATTGAGGGCTCTCAGCCGCTAGTAGCGTAACCGTCACATGGGCGAACTGGCTCTCCAACTATTTAAGCAGGAACACTTTCTCTTCAGCACCATTCTGCCATCCAGCCTTGGGCTACCGCTCATCAAGGCTTCCTTTCCTGCCTTCGGCTCCCAGTACTGTCACACCGCGCTATCCAGACAGCACACCACTTCCAGCGGTGTGAACCTCAACAGCGGCTCGGGGTTATACCAAGCCACATATCCGGTTCCAGATCCACGACAGTTCCACTGCATATCCATAGAGAATAACAGCAGTCAACTTCAGAGCAGCAAGCGCATGCGCACCGCGTTCACCAGTACGCAACTCCTGGAGTTGGAAAGGGAGTTCACCTCCAACATGTACCTTTCGAGACTTCGGCGCATAGAGATCGCGACTTACCTCAATCTGTCCGAGAAGCAAGTCAAGATCTGGTTCCAGAACCGCCGCGTCAAGCACAAAAAAGAGGGCAAAAGCGGCTCCCACAGGACGGGCTCCCACAATTGCAAGTGCTCGTCGTCCCTATCCTCCGCCCGGTGCTCTGAGGAAGAGGATGACCTTCCTATGTCACCTCCGACATCAGAAAAAGAGGACGCAGATCTGTCCGTTAGCCCGTGAACTCTTGATGACCACCACCTCAAAAGACTCTGTACGCCACGCCAGTGGAACCCTGAATGCAGCCAAAAAGCGACGGTATCTGCGCGCGCCGTCACCTGTAAATAGCGAGAAAGAAGGAAAAAAGAACTTTATATATGTGCGGGGTCTGTGTATCCCTTTAATGTTGTATATTTGTATACATGTTCTATGTTTGTAGTTTTTTTCTGAAAACAACTTAAGCCCGTAGTTCCGCATCCAAATACATTTCCTGTCACCAAAAGATTTTAAAATCAGTGATATCAAAATGAACAAAGCTGATATTTACCTACTTTTTCATTTGTATTTGTATTATTTTTATTATTATTATTATTGCTTTGTTTGTATGGATGGTGAGTACAGGGTAGCTTTAAGCACATTTTGGGGACAGAATGGAAATATGGGATGTATCTGATGTGTACGTCACTTCAATGACAGAATTTGTAATTGTACTTTTATCGTAATGAGAATATTTATTTATTTAAAAAACCTTAATGCTGAAAATAAA

Function

symbol description
gsx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in central nervous system development; neuron differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in central nervous system; head; and presumptive rhombomere 3. Orthologous to human GSX1 (GS homeobox 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09310 GSH; homeobox protein GSH

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_06560307_06561286.mRNA True 1284 mRNA 0.45 3 6559784 6561450

Neighbor

gene id symbol gene type direction distance location
CI01000059_06546191_06552012 ABHD10A coding downstream 7772 6546052 ~ 6552012 (-)
CI01000059_06537186_06537567 NA coding downstream 20474 6537104 ~ 6539310 (-)
CI01000059_06521399_06533677 TAGLN3A, TAGLN3 coding downstream 25228 6521159 ~ 6534556 (-)
CI01000059_06446066_06457895 EIF4E1B coding downstream 101865 6445276 ~ 6457919 (-)
CI01000059_06430220_06439547 CASR coding downstream 120237 6429884 ~ 6439547 (-)
CI01000059_06606518_06612481 GTF3A coding upstream 45041 6606491 ~ 6612481 (-)
CI01000059_06621058_06632392 WASF3 coding upstream 58448 6619898 ~ 6632909 (-)
CI01000059_06642665_06650346 RNF167 coding upstream 80859 6642309 ~ 6650998 (-)
CI01000059_06656629_06660298 SPAG7 coding upstream 94937 6656387 ~ 6660298 (-)
CI01000059_06668658_06675615 SLC25A11 coding upstream 105470 6666920 ~ 6675615 (-)
G255134 NA non-coding downstream 24188 6535218 ~ 6535596 (-)
G255118 NA non-coding downstream 88911 6470660 ~ 6470873 (-)
G255117 NA non-coding downstream 92340 6467184 ~ 6467444 (-)
G255108 NA non-coding downstream 151794 6407749 ~ 6407990 (-)
G255106 NA non-coding downstream 155821 6403735 ~ 6403963 (-)
G255168 NA non-coding upstream 8421 6569871 ~ 6570111 (-)
G255172 NA non-coding upstream 12981 6574431 ~ 6574642 (-)
G255176 NA non-coding upstream 17640 6579090 ~ 6579547 (-)
G255203 NA non-coding upstream 124445 6685895 ~ 6686151 (-)
G255205 NA non-coding upstream 128261 6689711 ~ 6689945 (-)
G255092 NA other downstream 316992 6236106 ~ 6242792 (-)
G254203 NA other downstream 1321485 5237786 ~ 5238299 (-)
G253914 NA other downstream 1805702 4753538 ~ 4754082 (-)
G253013 NA other downstream 3087875 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 4460117 2094279 ~ 2098985 (-)
G256890 NA other upstream 2420246 8981696 ~ 8982117 (-)
G257014 NA other upstream 2892766 9454216 ~ 9599008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031643 gsx1 coding NC_007116.7 CM002889.2 67909644 ~ 67911111 (-)