CI01000059_06606518_06612481 (GTF3A)


Basic Information

Item Value
gene id CI01000059_06606518_06612481
gene name GTF3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6606491 ~ 6612481 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_06606518_06612481.mRNA
ATGCATGAAAATAATAATAATCCCAGCGCAACATTTATTTGTTCCTTTCCTGACTGTCAAGCGTCATATAACAAAGAATGGAAACTAGAAGCGCATCTCTGCAAACACACAGGGGAGAGGCCCTTTAAGTGCGAGTATAACGGCTGCAGCAAATCTTTCTGCACGAAATATCACCTTGCTCGTCACACGCTGACACATACCGGCGACAGACCTTACATATGCACGGAGGACGGATGCGAAGAAGGATTCACCACAAACACCAACTTGAAGAAACATATTTCACGTATTCACAGACATGAGACAAAACAGTACATATGCACATTTGAAGGATGTGGCAAAGCATTCAAGAAGAATAACCAGCTGAAAACCCATGAGTGTTCACACACCCAGCTGCTACCGTTATTGTGCTCACATGAAGGCTGCGGGAGACGTTTTTCACAGCGTGGTCACCTGAAGCGCCATGAGAAGGTACACAAGGGCTATTCTTGCACGGCTGAGGGCTGCTCATTTGTGGCAAAGACCTGGACAGAGATGACAAACCACAACAAAGTTCATATAGTCAGGGTACAGTGTGATCAGTGTAAGAAAACATTCAGGGATAGCTGGTTCCTGAAACAGCATCAACATGTCCACTCTAAAGAGCGCGTGGTGTTCCACTGCCCCAGAGATGGATGTACCCGCTCATACACCACAGCGTTCAACCTGCAAAGCCACATCCTGTCCTTCCATGAAGAGCAGCGCTCCTTCATCTGTACTCATCCTGGCTGTGAAAAGTCCTTTTCCATGAAGCAAAGTTTACAGCGCCATGGTGTGGTTCATGATCCTGAAAAGAAGCAGCTGAAGCCCCGCCCAAAACGTTCCCTGGCATCCCGTCTGAGTGGCCACAAACCAAAAAAGAAACGTCAAGCAAAAACTTCAAATTCAGATGAATCTTCAATTCCACATATTAGCCAGTCAGAGACTACCTCTAATCCTCAATTAATAGGTCAGCTGCAATCATTCAGCTCTGAAAGTTTTAAAACGCTAAACGCAGACATCCCAGAAACCCCCCAGAGTTTAAGAAGTTCTGATTTAGAGCCCATCAAATCTGAGTGTGCTGTCAGCAAATCAAAATCTATTTATTTTGAGCTCAACAACGCTGCAAATCCAGTGGTGCACCTTTTAGAACCCCTCTTATTGTAGAGTCCAGTGGTCAGCAGTCAAATTACA

Function

symbol description
gtf3a Enables 5S rRNA binding activity. Involved in ribosomal large subunit biogenesis. Located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_06606518_06612481.mRNA True 1209 mRNA 0.45 9 6606491 6612481

Neighbor

gene id symbol gene type direction distance location
CI01000059_06560307_06561286 GSX1 coding downstream 45041 6559784 ~ 6561450 (-)
CI01000059_06546191_06552012 ABHD10A coding downstream 54479 6546052 ~ 6552012 (-)
CI01000059_06537186_06537567 NA coding downstream 67181 6537104 ~ 6539310 (-)
CI01000059_06521399_06533677 TAGLN3A, TAGLN3 coding downstream 71935 6521159 ~ 6534556 (-)
CI01000059_06446066_06457895 EIF4E1B coding downstream 148572 6445276 ~ 6457919 (-)
CI01000059_06621058_06632392 WASF3 coding upstream 7417 6619898 ~ 6632909 (-)
CI01000059_06642665_06650346 RNF167 coding upstream 29828 6642309 ~ 6650998 (-)
CI01000059_06656629_06660298 SPAG7 coding upstream 43906 6656387 ~ 6660298 (-)
CI01000059_06668658_06675615 SLC25A11 coding upstream 54439 6666920 ~ 6675615 (-)
CI01000059_06743553_06768560 KIF1C coding upstream 130780 6743261 ~ 6768560 (-)
G255176 NA non-coding downstream 26944 6579090 ~ 6579547 (-)
G255172 NA non-coding downstream 31849 6574431 ~ 6574642 (-)
G255168 NA non-coding downstream 36380 6569871 ~ 6570111 (-)
G255134 NA non-coding downstream 70895 6535218 ~ 6535596 (-)
G255118 NA non-coding downstream 135618 6470660 ~ 6470873 (-)
G255203 NA non-coding upstream 73414 6685895 ~ 6686151 (-)
G255205 NA non-coding upstream 77230 6689711 ~ 6689945 (-)
G255209 NA non-coding upstream 83569 6696050 ~ 6696343 (-)
G255158 NA non-coding upstream 185289 6797770 ~ 6801605 (-)
G255238 NA non-coding upstream 198321 6810802 ~ 6811025 (-)
G255092 NA other downstream 363699 6236106 ~ 6242792 (-)
G254203 NA other downstream 1368192 5237786 ~ 5238299 (-)
G253914 NA other downstream 1852409 4753538 ~ 4754082 (-)
G253013 NA other downstream 3134582 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 4506824 2094279 ~ 2098985 (-)
G256890 NA other upstream 2369215 8981696 ~ 8982117 (-)
G257014 NA other upstream 2841735 9454216 ~ 9599008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location