CI01000059_06642665_06650346 (RNF167)


Basic Information

Item Value
gene id CI01000059_06642665_06650346
gene name RNF167
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 6642309 ~ 6650998 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_06642665_06650346.mRNA
ATTGAAGTCAGCATGCAATGAAAATTCACCCTATCTATTTTGTAAATGCATGTTATATATCGTATTGTGAATGATTCTTCTGTGCATTTAAATATTTTTCTTTCTTTATTTTTTGACATGGTAATGTATAATCAAAATGTGAAAACTCATTCTTCTCTCTGGTGACGCATGCTGGACTTCTCCAGTAATTTAGTCCACTTAAACTCCCATCTTTTTTTTTACGCTCTGATTTACGCCACAAAATGGAAGAAAAGATCTGTCACTGCTAAAGTTTCATCAGCGACTTTAGCCCATTAGTGGGTCACTGCAGTGATAAAAATAACACATAACTCCAGATTTGTTATTATTAGCACAGATCAGCCACATACAAAACTGCTGATAATCATGACTTTATCCTAAGGGAAGAAATATTTTTTCATAAGCTGATATGTGCAATTTGTAAGTCAACATTTATTTCATAGTTATAAAGCTATCTTAAAAAAAGTGATGTATGTATTTAACAGATTGACCTGTTTCTTGTATCCTTTTCTTTGTCTAATTTCTTTAGACATTGCACACTGAAAATTTGGTGTTTTTGATGTTGAAGGTTTTAAAATCATGAATCTGTGTGCAGGTCTTCATCGCCCCTCATCAGGGCCCAGCCTAATTCAGGATGGTGTGTGTGGGGACTCTGGGTGTCTCTGTCCTTGTCTTATGCTTCGCTCTGGCACCCTCTCCTGGTCAGGCATATATATATGCTCATTACAGTAACATGACCTCCATGCTGTTCGAAGATCTGCCTGCTCTCTTTGGCTCTCCTCTGCCAAAAGATGGACTCACGGGTGTGCTGGTTGAAGCTCGTCCTCAGAACGCTTGCACACCTATAGATCCTCCTCCAGTTTCTCCCACACCCTCCGATCCCACTACAAACAGCACTACAAAATACATCGTCCTCATTCGACGCTACGACTGTAACTTTGATATCAAGGTGCTCCATGCACAGAGGGCTGGTTTCAGTGCAGCAATAGTTCACAACATGTACTCTAATTCACTTCTCAGTATGGGATACAGCAATGAGACCATTGCAGAGGAGATCGAGATTCCCTCTGTGTTCACAAGCTACTATGCCTCTCAAATACTGCGCAGCTTTATCATACCAGAGAAAGGGGCCTATGTGATTCTGAAGCCTGAGTTCTCCTTTCCTCTGTCCTACTATCTCATCCCCTTCACTGGAGTCGTGGGCATGATCATCATTGTCATGGTCATCATACTGATTGTGCGGTGCGTGCAGCACAGGAAGAGACTTCGGAAAAACAGACTCTCCAAAGAACAGCTGAGGAAAATCCCCACTCACAAGTTTGTTAAAGGTGATGAGTATGATGTGTGCGCGATTTGCCTGGATGAATATGAAGAGGGAGATAAGCTGAGAGTGCTGCCGTGTTCACATGCTTACCACTGCAGGTGTGTGGACCCCTGGCTCACCCAAACCAAGAAAACCTGCCCGGTGTGCAAGCAACGTGTGACCCGTCCCAACCCAGAACACTCTGAGTCTTCAGATTCTGAGGAAGAGGCAGGGCCGCGCGAGGCTGGCGAGGAAGAGGAAGGAGTAATCAGTGAGGCCGATTCTGAGCGCACCCCTCTCCTTCGTTCATCCAACCCTGCGTCTCCTGCCTCTTCCAGCCCGCCTCCGAATTACGCCTCCACCGTAACGTCCCCGGCAGCCGTGGCTACGGTAACAACCTCCGCACAGTGCTTGCCGCACACACTGCAGCATGACGTGCCCCTCCTGGGCCAGGATGAGTACTGCTCACCCATAGAGGACTCGGATGAAGCTACTGATGATGAGGAGGGTCACCCCTCAGATAACGACACCACAGAGCTTATTGGACGCGGCGCTCTACGAGTCTGAGCCATTGATTTAAAAACGGCCCTTTATCTCGGTCACTTTGGTTGTTCTAGCGATCCATTTTCTCTGATGTCTATCACAGATTTTGGATTTTTACACCCCTTTTTTTGAGATGCATTTTGTCTCAGTCCAGTCTCACTGAGATGCACGTCCATCACACTTTTAGTTATAGCTAAATCATCCAACACTAAACAGCATATGTGTTACATTTTATAGTTCCTGACAAAAATACACAGATTGGTGTGGTTCACAAAATCATTTGTTCTCCTAAAATGTCCAAATCAAAGTTAAAGGTAATGGAAAAACTATTTGAAGTTGCTGACAGCGTTTCTTGACAAAATAGTCAATACATAAATAAA

Function

symbol description
rnf167 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of cell cycle and ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human RNF167 (ring finger protein 167).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_06642665_06650346.mRNA True 2244 mRNA 0.44 9 6642309 6650998

Neighbor

gene id symbol gene type direction distance location
CI01000059_06621058_06632392 WASF3 coding downstream 9400 6619898 ~ 6632909 (-)
CI01000059_06606518_06612481 GTF3A coding downstream 29828 6606491 ~ 6612481 (-)
CI01000059_06560307_06561286 GSX1 coding downstream 80859 6559784 ~ 6561450 (-)
CI01000059_06546191_06552012 ABHD10A coding downstream 90297 6546052 ~ 6552012 (-)
CI01000059_06537186_06537567 NA coding downstream 102999 6537104 ~ 6539310 (-)
CI01000059_06656629_06660298 SPAG7 coding upstream 5389 6656387 ~ 6660298 (-)
CI01000059_06668658_06675615 SLC25A11 coding upstream 15922 6666920 ~ 6675615 (-)
CI01000059_06743553_06768560 KIF1C coding upstream 92263 6743261 ~ 6768560 (-)
CI01000059_06817935_06848280 NA coding upstream 166892 6817890 ~ 6848280 (-)
CI01000059_06914640_06936857 NA coding upstream 262864 6913862 ~ 6936857 (-)
G255176 NA non-coding downstream 62762 6579090 ~ 6579547 (-)
G255172 NA non-coding downstream 67667 6574431 ~ 6574642 (-)
G255168 NA non-coding downstream 72198 6569871 ~ 6570111 (-)
G255134 NA non-coding downstream 106713 6535218 ~ 6535596 (-)
G255118 NA non-coding downstream 171436 6470660 ~ 6470873 (-)
G255203 NA non-coding upstream 34897 6685895 ~ 6686151 (-)
G255205 NA non-coding upstream 38713 6689711 ~ 6689945 (-)
G255209 NA non-coding upstream 45052 6696050 ~ 6696343 (-)
G255158 NA non-coding upstream 146772 6797770 ~ 6801605 (-)
G255238 NA non-coding upstream 159804 6810802 ~ 6811025 (-)
G255092 NA other downstream 399517 6236106 ~ 6242792 (-)
G254203 NA other downstream 1404010 5237786 ~ 5238299 (-)
G253914 NA other downstream 1888227 4753538 ~ 4754082 (-)
G253013 NA other downstream 3170400 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 4542642 2094279 ~ 2098985 (-)
G256890 NA other upstream 2330698 8981696 ~ 8982117 (-)
G257014 NA other upstream 2803218 9454216 ~ 9599008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031647 rnf167 coding NC_007116.7 CM002889.2 68037629 ~ 68058168 (-)