XLOC_010187


Basic Information

Item Value
gene id XLOC_010187
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42464009 ~ 42470156 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020184
TCCCACAGAGTCATCCTTGTCTTTTCTTTGGGAGAACATTTTTATAAAGAGCAATGGAAATACGTGTTTTTGTcctgcttcatatttttgtgatGCCATATTTTACAGACACAACTACAGCTAAAGGGCTGCAAAAATTTCCTCAATTCCAGCTGGAAGATCCCTCACTTTCAAATGGAAAAAAGGCATTTCAGGTCGTTACATCAATGTAATCCTTCGTGGCTCCAATCGAATTCTTACCCTCTGCGAGCTTGAAGTTTACGGTTATCCGGCTCCCAATGGTGAAAATGTAGCTTTAATAGGTAAAGCTACACAGAGTTTTCTCTATGGAAATGGTTTTGCATCTAATGCAAATGATGGGAACAAAGATGGTGTTTACACTCATGGAtcctgcacacacactcacaaaaccCTCAACCCCTGGTGGAGACTGGACCTGCTGAAAAGGCACAAAGTGTTTTCGGTGGTCATTACAAACACATTAGACAATCTTCCTGAAAGATTAAATGGTGCAGAAATCCGAATTGGAGACAATCTGGACAACAATGGCAATAATAATCCCAGATGTGCTACAATCGCTTCCATTCCTGCTGGTTTCTCCAGCTCTTTTGACTGTGATGGGATGGAAGGACGTTACGTTAATGTTGTTATTCCAGGACGAGAAGAATATCTAACACTGTGTGAGGTTGAAGTTTACGGATCGCCACTGGACTGACAAAATGATTAACCTGTATGCTTTTCACAATCTAAAGTGttagatttattaattaaaacagtttgccaaaataaaaccttAAGAGTCAAAAAGAAATAAAGGAAAACTAATTTGTACTTTATATGTCTGTGaagaacatttaaaataaaaataaaaacttaaattaaaaaaaaaataaaagataaaaaaatagaaacataGAGACATTTGTTGAATATTATctgcactttttaaaataaaggttcttttTGCCATTGATGG
>TCONS_00022013
ATTGATCACAGTGTCATTTTTCTTGACCTGTTATTCCTCTCTTGCAGAGCAATACACAACTACAGAAATCTGGCTTTAAGTGGCAGGGCCACACAATCAGACCTGTTGAAAAATCCATGGACAGGAGAGGCCCTTGCCAGTAATGCTATTGATGGAAATCGTGACCCAGATTTTTACCATGGGTCTTGTACTGCCACTGAAGTACAAGATGATCCGTGGTGGAGGTTAGATTTACTAGACACATATGTGGTGAAATCCATAACAATAACAAACCGAAAAGACTGCTGTCCTGAAAGACTTGATGGAGCCGAGGTTCACATTGGTAACTCTCTGCTGAACAATGGCAACAGCAATCCACTGGCTGCAAAAATTTCCTCAATTCCAGCTGGAAGATCCCTCACTTTCAAATGGAAAAAAGGCATTTCAGGTCGTTACATCAATGTAATCCTTCGTGGCTCCAATCGAATTCTTACCCTCTGCGAGCTTGAAGTTTACGGTTATCCGGCTCCCAATGGTGAAAATGTAGCTTTAATAGGTAAAGCTACACAGAGTTTTCTCTATGGAAATGGTTTTGCATCTAATGCAAATGATGGGAACAAAGATGGTGTTTACACTCATGGAtcctgcacacacactcacaaaaccCTCAACCCCTGGTGGAGACTGGACCTGCTGAAAAGGCACAAAGTGTTTTCGGTGGTCATTACAAACACATTAGACAATCTTCCTGAAAGATTAAATGGTGCAGAAATCCGAATTGGAGACAATCTGGACAACAATGGCAATAATAATCCCAGATGTGCTACAATCGCTTCCATTCCTGCTGGTTTCTCCAGCTCTTTTGACTGTGATGGGATGGAAGGACGTTACGTTAATGTTGTTATTCCAGGACGAGAAGAATATCTAACACTGTGTGAGGTTGAAGTTTACGGATCGCCACTGGACTGACAAAATGATTAACCTGTATGCTTTTCACAATCTAAAGTGttagatttattaattaaaacagtttgccaaaataaaaccttAAGAGTCAAAAAGAAATAAAGGAAAACTAATTTGTACTTTATATGTCTGTGaagaacatttaaaataaaaataaaaacttaaattaaaaaaaaaataaaagataaaaaaatagaaacataGAGACATTTGTTGAATATTATctgcactttttaaaataaaggttcttttTGCCATTGATGG
>TCONS_00020185
ATGGAAATACGTGTTTTTGTcctgcttcatatttttgtgatGCCATATTTTACAGACACAACTACAGCTAAAGCTAGAAATCTGGCTTTAAGTGGCAGGGCCACACAATCAGACCTGTTGAAAAATCCATGGACAGGAGAGGCCCTTGCCAGTAATGCTATTGATGGAAATCGTGACCCAGATTTTTACCATGGGTCTTGTACTGCCACTGAAGTACAAGATGATCCGTGGTGGAGGTTAGATTTACTAGACACATATGTGGTGAAATCCATAACAATAACAAACCGAAAAGACTGCTGTCCTGAAAGACTTGATGGAGCCGAGGTTCACATTGGTAACTCTCTGCTGAACAATGGCAACAGCAATCCACTGGCTGCAAAAATTTCCTCAATTCCAGCTGGAAGATCCCTCACTTTCAAATGGAAAAAAGGCATTTCAGGTCGTTACATCAATGTAATCCTTCGTGGCTCCAATCGAATTCTTACCCTCTGCGAGCTTGAAGTTTACGGTTATCCGGCTCCCAATGGTGAAAATGTAGCTTTAATAGGTAAAGCTACACAGAGTTTTCTCTATGGAAATGGTTTTGCATCTAATGCAAATGATGGGAACAAAGATGGTGTTTACACTCATGGAtcctgcacacacactcacaaaaccCTCAACCCCTGGTGGAGACTGGACCTGCTGAAAAGGCACAAAGTGTTTTCGGTGGTCATTACAAACACATTAGACAATCTTCCTGAAAGATTAAATGGTGCAGAAATCCGAATTGGAGACAATCTGGACAACAATGGCAATAATAATCCCAGATGTGCTACAATCGCTTCCATTCCTGCTGGTTTCTCCAGCTCTTTTGACTGTGATGGGATGGAAGGACGTTACGTTAATGTTGTTATTCCAGGACGAGAAGAATATCTAACACTGTGTGAGGTTGAAGTTTACGGATCGCCACTGGACTGACAAAATGATTAACCTGTATGCTTTTCACAATCTAAAGTGttagatttattaattaaaacagtttgccaaaataaaaccttAAGAGTCAAAAAGAAATAAAGGAAAACTAATTTGTACTTTATATGTCTGTGaagaacatttaaaataaaaataaaaacttaaattaaaaaaaaaataaaagataaaaaaatagaaacataGAGACATTTGTTGAATATTATctgcactttttaaaataaaggttcttttTGCCATTGATGG
>TCONS_00020186
atgtgtctACATACAAAGAAAATGCTACCTCTTGACTACAGTCCTTTGTTAATTGCAGCTAGAAATCTGGCTTTAAGTGGCAGGGCCACACAATCAGACCTGTTGAAAAATCCATGGACAGGAGAGGCCCTTGCCAGTAATGCTATTGATGGAAATCGTGACCCAGATTTTTACCATGGGTCTTGTACTGCCACTGAAGTACAAGATGATCCGTGGTGGAGGTTAGATTTACTAGACACATATGTGGTGAAATCCATAACAATAACAAACCGAAAAGACTGCTGTCCTGAAAGACTTGATGGAGCCGAGGTTCACATTGGTAACTCTCTGCTGAACAATGGCAACAGCAATCCACTGGCTGCAAAAATTTCCTCAATTCCAGCTGGAAGATCCCTCACTTTCAAATGGAAAAAAGGCATTTCAGGTCGTTACATCAATGTAATCCTTCGTGGCTCCAATCGAATTCTTACCCTCTGCGAGCTTGAAGTTTACGGTTATCCGGCTCCCAATGGTGAAAATGTAGCTTTAATAGGTAAAGCTACACAGAGTTTTCTCTATGGAAATGGTTTTGCATCTAATGCAAATGATGGGAACAAAGATGGTGTTTACACTCATGGAtcctgcacacacactcacaaaaccCTCAACCCCTGGTGGAGACTGGACCTGCTGAAAAGGCACAAAGTGTTTTCGGTGGTCATTACAAACACATTAGACAATCTTCCTGAAAGATTAAATGGTGCAGAAATCCGAATTGGAGACAATCTGGACAACAATGGCAATAATAATCCCAGATGTGCTACAATCGCTTCCATTCCTGCTGGTTTCTCCAGCTCTTTTGACTGTGATGGGATGGAAGGACGTTACGTTAATGTTGTTATTCCAGGACGAGAAGAATATCTAACACTGTGTGAGGTTGAAGTTTACGGATCGCCACTGGACTGACAAAATGATTAACCTGTATGCTTTTCACAATCTAAAGTGttagatttattaattaaaacagtttgccaaaataaaaccttAAGAGTCAAAAAGAAATAAAGGAAAACTAATTTGTACTTTATATGTCTGTGaagaacatttaaaataaaaataaaaacttaaattaaaaaaaaaataaaagataaaaaaatagaaacataGAGACATTTGTTGAATATTATctgcactttttaaaataaaggttcttttTGCCATTGATGGAAACGCCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131127-215 Predicted to enable carbohydrate binding activity.

Ensembl:

ensembl_id ENSDARG00000040130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020184 False 976 lncRNA 0.36 5 42464009 42470146
TCONS_00022013 False 1209 lncRNA 0.38 7 42464222 42470146
TCONS_00020185 False 1221 mRNA 0.38 5 42464613 42470146
TCONS_00020186 True 1216 mRNA 0.39 4 42465518 42470156

Neighbor

gene id symbol gene type direction distance location
XLOC_010186 NA coding upstream 126460 42337245 ~ 42337549 (+)
XLOC_010185 CU104741.1 coding upstream 155329 42270499 ~ 42308680 (+)
XLOC_010184 NA coding upstream 367749 42090306 ~ 42096260 (+)
XLOC_010183 BX649388.2 coding upstream 390304 42066582 ~ 42073705 (+)
XLOC_010182 fli1b coding upstream 417128 42018041 ~ 42046881 (+)
XLOC_010188 pkdc coding downstream 1299 42471455 ~ 42472987 (+)
XLOC_010189 si:ch211-135n15.1 coding downstream 6999 42477155 ~ 42477952 (+)
XLOC_010190 herpud2 coding downstream 11291 42481447 ~ 42495383 (+)
XLOC_010191 NA coding downstream 50550 42520706 ~ 42521936 (+)
XLOC_010192 dpy19l1l coding downstream 197404 42667560 ~ 42683501 (+)
XLOC_010175 BX005012.2 non-coding upstream 915572 41546763 ~ 41548437 (+)
XLOC_010173 BX005012.4 non-coding upstream 990691 41465511 ~ 41473318 (+)
XLOC_010193 NA non-coding downstream 220903 42691059 ~ 42693663 (+)
XLOC_010194 NA non-coding downstream 302512 42772668 ~ 42781775 (+)
XLOC_010195 NA non-coding downstream 325448 42795604 ~ 42800731 (+)
XLOC_010197 CR854827.2 non-coding downstream 406290 42876446 ~ 42878011 (+)

Expression


Co-expression Network