Gene
RNA
| Item | Value |
|---|---|
| gene id | G251529 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000059 |
| NCBI id | null |
| chromosome length | 10376574 |
| location | 660013 ~ 660240 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU285527 | True | 228 | lncRNA | 0.39 | 1 | 660013 | 660240 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000059_00570850_00600462 | DKFZP459B1536, PIK3R1 | coding | downstream | 59155 | 570850 ~ 600858 (-) |
| CI01000059_00513674_00528840 | SLC30A5, CCNB1 | coding | downstream | 130064 | 513469 ~ 529949 (-) |
| CI01000059_00476366_00482307 | NA | coding | downstream | 177706 | 475994 ~ 482307 (-) |
| CI01000059_00456370_00458895 | NA | coding | downstream | 200573 | 456284 ~ 459440 (-) |
| CI01000059_00378673_00379901 | NA | coding | downstream | 279989 | 378587 ~ 380137 (-) |
| CI01000059_00697568_00720771 | MAST4 | coding | upstream | 37328 | 697568 ~ 720771 (-) |
| CI01000059_00767393_00826328 | NA | coding | upstream | 105493 | 765733 ~ 826581 (-) |
| CI01000059_00853242_00855219 | NA | coding | upstream | 192514 | 852754 ~ 855284 (-) |
| CI01000059_00867492_00873239 | NA | coding | upstream | 206425 | 866665 ~ 873239 (-) |
| CI01000059_00991306_01000173 | BMCC1, PRUNE2 | coding | upstream | 330791 | 991031 ~ 1000173 (-) |
| G251528 | NA | non-coding | downstream | 3149 | 656632 ~ 656864 (-) |
| G251518 | NA | non-coding | downstream | 29783 | 629978 ~ 630230 (-) |
| G251484 | NA | non-coding | downstream | 47447 | 612163 ~ 612566 (-) |
| G251393 | NA | non-coding | downstream | 65888 | 586930 ~ 594125 (-) |
| G251478 | NA | non-coding | downstream | 100022 | 559627 ~ 559991 (-) |
| G251534 | NA | non-coding | upstream | 8983 | 669223 ~ 670067 (-) |
| G251537 | NA | non-coding | upstream | 13968 | 674208 ~ 674444 (-) |
| G251540 | NA | non-coding | upstream | 17275 | 677515 ~ 677758 (-) |
| G251549 | NA | non-coding | upstream | 22500 | 682740 ~ 683017 (-) |
| G251569 | NA | non-coding | upstream | 226427 | 886667 ~ 886876 (-) |
| CI01000059_01253451_01254823 | NA | other | upstream | 591476 | 1251716 ~ 1254823 (-) |
| CI01000059_02096875_02098872 | CDC26 | other | upstream | 1436457 | 2094279 ~ 2098985 (-) |
| G253013 | NA | other | upstream | 2811235 | 3471475 ~ 3471909 (-) |
| G253914 | NA | other | upstream | 4093298 | 4753538 ~ 4754082 (-) |
| G254203 | NA | other | upstream | 4577546 | 5237786 ~ 5238299 (-) |
