G251511


Basic Information

Item Value
gene id G251511
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 933490 ~ 937795 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU285505
GGTCAAAGAAAACAATTAAACAATGAGATGCAAAAAGAGTTTTAATGAAACACTCCTGAAGAGCCACACCCTGAGGAGATTAAGTGTTTACATGGGTCATGCATACGCCCCATAATCAACTAACAGATGTGTTTATTGAGTGCCACAGAGAGCCAGCAGGATCTTTTCATAATCTCCACTTGTTTCCTTCAGAATGGCCTCCTGAAGGGTTTTGCCATACATCCTCTTGTACTCTTGAATGATTTTCAGCAGGTCAATTTCTGAACGACTCACAATGATTCTAGTTAGTGTGTCAGTGTTGGTTCCCAGTCCCTTCATTGCCAGGTGGAGCTTTTCTGCAAAGTAGGCAGGTTTGTTCCAAGCAGATTTTACCAGTGTCATCAGGCAGTCTTCAAAGCTTCCATGTAGCTCACCCTCCAGATCTTTGGCCAAACCGTCTTTGCTAAGTTGGCCATAATATTGGAAAATTTTGCACAACTGAGCTTCACTCCTGTTTGTGAGAATGTCAATCAGAACAGAACAAACAGTGCCAAGCCGATTCTCTCCTGCCTCAAACAGAGCCTTTGCATCACTCTTAGCCACTCCATCATCAATGTTACGGTCTTCACTCCTGGTAGCCTTGCAAAGGGCAACTAGGGTAGTCTCAAGATGTCCTTTAACTTCACATTTAATATCTTCCTCCAGCATCTCTCCATAGACTTCTTTGAAAGTATTCTTCAATGCTGTAATCTCCTTGTTTGATCTGGTCCCCAGAATTTCACTTAGGACATTCTCATTTGTCCCAAGATTCTTCATAGCTCTTTTCATTTCAAAAGCATCATACTCAGGCGGTGTCATCAGCAAAGCCAGGACCACCTCCTCAAAATCTGACTTCAGAGCCTTTTTCAAATCATCTGCCAGAGGTTTTCCTGCACTCTGCTGATAAGCTGCTTTGATCTGTTGTCTTTGTGAATTGCTCCTCTTTGCTAGAACCTCCACAATAGTGGCTTCATCCACACCTTTGGTCTCAATGGCTTTCTTTAATTTTGCAGCATCATTCTGGGCATTAAAGTTTGGATCAGTCTTGACTGTTCCAAAGTATCCTGTCTCAACAGCAGGAGCAGCTTTAAAACCCTTGTCATCATTACTTTGCTGGAAAAGTTGCTGCAAAAAAGCCATCTTGCGAGCTTTGAAGAAGTTGTTCCTCTGTGAAGTCTGTAAAGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285505 True 1206 lncRNA 0.43 13 933490 937795

Neighbor

gene id symbol gene type direction distance location
CI01000059_00867492_00873239 NA coding downstream 60251 866665 ~ 873239 (-)
CI01000059_00853242_00855219 NA coding downstream 78206 852754 ~ 855284 (-)
CI01000059_00767393_00826328 NA coding downstream 106909 765733 ~ 826581 (-)
CI01000059_00697568_00720771 MAST4 coding downstream 212719 697568 ~ 720771 (-)
CI01000059_00570850_00600462 DKFZP459B1536, PIK3R1 coding downstream 332632 570850 ~ 600858 (-)
CI01000059_00991306_01000173 BMCC1, PRUNE2 coding upstream 53236 991031 ~ 1000173 (-)
CI01000059_01022397_01031991 NA coding upstream 83943 1021738 ~ 1032204 (-)
CI01000059_01042330_01049708 GNAQ, GNA11B, GNAQ.L, GNAQ.S, GNA11, GNA11.S coding upstream 104455 1042250 ~ 1049927 (-)
CI01000059_01062456_01073742 HNRPKL, HNRNPK coding upstream 124661 1062456 ~ 1073742 (-)
CI01000059_01118201_01130248 KCMF1, KCMF1.L, YOY6 coding upstream 179921 1117716 ~ 1130248 (-)
G251569 NA non-coding downstream 46614 886667 ~ 886876 (-)
G251549 NA non-coding downstream 250473 682740 ~ 683017 (-)
G251540 NA non-coding downstream 255732 677515 ~ 677758 (-)
G251537 NA non-coding downstream 259046 674208 ~ 674444 (-)
G251534 NA non-coding downstream 263423 669223 ~ 670067 (-)
G251583 NA non-coding upstream 1847 939642 ~ 939860 (-)
G251586 NA non-coding upstream 14349 952144 ~ 952360 (-)
G251587 NA non-coding upstream 17609 955404 ~ 955643 (-)
G251589 NA non-coding upstream 21429 959224 ~ 959437 (-)
G251593 NA non-coding upstream 35758 973553 ~ 973909 (-)
CI01000059_00378673_00379901 NA other downstream 553353 378587 ~ 380137 (-)
CI01000059_01253451_01254823 NA other upstream 313921 1251716 ~ 1254823 (-)
CI01000059_02096875_02098872 CDC26 other upstream 1158902 2094279 ~ 2098985 (-)
G253013 NA other upstream 2533680 3471475 ~ 3471909 (-)
G253914 NA other upstream 3815743 4753538 ~ 4754082 (-)
G254203 NA other upstream 4299991 5237786 ~ 5238299 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location