XLOC_010194


Basic Information

Item Value
gene id XLOC_010194
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42772668 ~ 42781775 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020192
GGAAGCACTAACTGAAAATGACCCAAGACAAACACGCCGTCAACATCAGTAATGATTCAGTTCCTCCAGATTAGGTGCTATTTCTACTTCTAAATGGATTTTAATTGTAACACTGAATTATTGTTACCCAAGCACATTTAAGGATGCCCAGACATGATGATATGAACAGCTATCTCCAACAACAAACCTCACCATTTGACCAACAGGTGCTTTCTAAATTCCTGAACATCAGCCCAAAGGCTTTGGGGGCTTTGGAAATATCAGTAGGTATAGAAATGCTTGTTCTATCAATCTGGACAAGGTTTTTGTATCTTCTCTGGCCGTGTCTAATTTCAATTTTAACTGGATCTGTGACTATCTCAGCTGCACACATTCGTAGCACATGTCAGGTCAGAATCTCACAGCTTCTGAACTGTTTCAGTGCCATAGCAGCCGTTGTCTCCATTCCATGTCACTGTTTGGACAGTGAGGGTAAGACTCTAATTCTCTTGCTAGTCTGTGATGTTCTGATCTTCATCCTCTCTGTTATTGTGGCCTCTACATTTTGTGACTGCTGCAAGAAGTCTGGGCGAGCTGCAGTGAGTTACATAAAAAGAGATGTGCCTTACATGACTGATAACAATACTGAGCCTCAGGGACAACAAAACCCCTTTATACCTCCACCATACAGTGATCAAGGCAGTTCTGCACTTCAATCAAACTACAATCCAAAACTTTCTGCACCTCTGCCAAAATATGATCTATATCCTTCTCTGGCAAACTACATCCCAAATAATGATGCAGTCTTGTCTTCACCTTCGTTTAATTATGATCTACATCTTTCTGAACCTCTACCAAGCTATGATTCACGTCCACCAGCATCTGCATTGAACTGTGATCCAAGTCCTTCTGCCACTCCATTGCCACAACTATAACTAATGGGATTGTTATGATCATTGGAAGAAATCACCCAGAGTGCTTTATTTTAGCCcacttttgtttgaaaatgtataaATTCATGTATCGTGTGTAGGTGTTActcttttaaaagttttatattttcagtattcacatatttattaatataattccAGTATTTGTGTATGAATCATTGATTTTACatcactttgttgtttttttagctgtatatgtatattttttgtctGACAACTACAAGTTCAAGaaacaattaaatgtttgttttggcagT
>TCONS_00020193
GAAAATGACCCAAGACAAACACGCCGTCAACATCAGTAATGATTCAGTTCCTCCAGATTAGGTGCTATTTCTACTTCTAAATGGATTTTAATTGTAACACTGAATTATTGTTACCCAAGgaataataaactcattcattcagaACAACTAATTGCAACATATTTCTACCAGCACATTTAAGGATGCCCAGACATGATGATATGAACAGCTATCTCCAACAACAAACCTCACCATTTGACCAACAGGTGCTTTCTAAATTCCTGAACATCAGCCCAAAGGCTTTGGGGGTAAATAAATCTGTTCAACATCTATCTCTCT
>TCONS_00020194
ATCAGTAATGATTCAGTTCCTCCAGATTAGGTGCTATTTCTACTTCTAAATGGATTTTAATTGTAACACTGAATTATTGTTACCCAAGCACATTTAAGGATGCCCAGACATGATGATATGAACAGCTATCTCCAACAACAAACCTCACCATTTGACCAACAGGTGCTTTCTAAATTCCTGAACATCAGCCCAAAGGCTTTGGGGGCTTTGGAAATATCAGTAGGTATAGAAATGCTTGTTCTATCAATCTGGACAAGGTTTTTGTATCTTCTCTGGCCGTGTCTAATTTCAATTTTAACTGGATCTGTGACTATCTCAGCTGCACACATTCGTAGCACATGTCAGTGCCATAGCAGCCGTTGTCTCCATTCCATGTCACTGTTTGGACAGTGAGGGTAAGACTCTAATTCTCTTGCTAGTCTGTGATGTTCTGATCTTCATCCTCTCTGTTATTGTGGCCTCTACATTTTGTGACTGCTGCAAGAAGTCTGGGCGAGCTGCAGTGAGTTACATAAAAAGAGATGTGCCTTACATGACTGATAACAATACTGAGCCTCAGGGACAACAAAACCCCTTTATACCTCCACCATACAGTGATCAAGGCAGTTCTGCACTTCAATCAAACTACAATCCAAAACTTTCTGCACCTCTGCCAAAATATGATCTATATCCTTCTCTGGCAAACTACATCCCAAATAATGATGCAGTCTTGTCTTCACCTTCGTTTAATTA
>TCONS_00020195
ggcctttgcctttcatataagccacttctgaaaccaaatgatcaactagaagtcaagttattatttgttgttcctaaaacttagataggtgacaagaccattgtcaggtagtgtatacatgctaaattttacattaaaaggaAACAATTACTTGTTTTGTATTTTACAGGCTTTGGAAATATCAGTAGGTATAGAAATGCTTGTTCTATCAATCTGGACAAGGTTTTTGTATCTTCTCTGGCCGTGTCTAATTGTAAGTATTGATTCCAACACCAAGACAACACCGTGCCAACAACAAACCCTGAACAATCTTTACTTCTTTTTACTGTAGTCAATTTTAACTGGATCTGTGACTATCTCAGCTGCACACATTCGTAGCACATGTCAGTGCCATAGCAGCCGTTGTCTCCATTCCATGTCACTGTTTGGACAGTGAGGGTAAGACTCTAATTCTCTTGCTAGTCTGTGATGTTCTGATCTTCATCCTCTCTGTTATTGTGGCCTCTACATTTTGTGACTGCTGCAAGAAGTCTGGGCGAGCTGCAGTGAGTTACATAAAAAGAGATGTGCCTTACATGACTGATAACAATACTGAGCCTCAGGGACAACAAAACCCCTTTATACCTCCACCATACAGTGATCAAGGCAGTTCTGCACTTCAATCAAACTACAATCCAAAACTTTCTGCACCTCTGCCAAAATATGATCTATATCCTTCTCTGGCAAACTACATCCCAAATAATGATGCAGTCTTGTCTTCACCTTCGTTTAATTATGATCTACATCTTTCTGAACCTCTACCAAGCTATGATTCACGTCCACCAGCAT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131121-526 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000096933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020192 False 1189 lncRNA 0.38 7 42772668 42781775
TCONS_00020193 False 318 lncRNA 0.37 2 42772681 42774583
TCONS_00020194 False 732 nonsense_mediated_decay 0.41 7 42772712 42781394
TCONS_00020195 True 828 lncRNA 0.39 4 42776393 42781447

Neighbor

gene id symbol gene type direction distance location
XLOC_010193 NA coding upstream 79005 42691059 ~ 42693663 (+)
XLOC_010192 dpy19l1l coding upstream 89167 42667560 ~ 42683501 (+)
XLOC_010191 NA coding upstream 250732 42520706 ~ 42521936 (+)
XLOC_010190 herpud2 coding upstream 277285 42481447 ~ 42495383 (+)
XLOC_010189 si:ch211-135n15.1 coding upstream 294716 42477155 ~ 42477952 (+)
XLOC_010195 NA coding downstream 13829 42795604 ~ 42800731 (+)
XLOC_010196 polr3glb coding downstream 47960 42829735 ~ 42843397 (+)
XLOC_010197 CR854827.2 coding downstream 94671 42876446 ~ 42878011 (+)
XLOC_010198 NA coding downstream 115807 42897582 ~ 42901740 (+)
XLOC_010199 NA coding downstream 259730 43041505 ~ 43048279 (+)
XLOC_010187 NA non-coding upstream 302512 42464009 ~ 42470156 (+)
XLOC_010186 NA non-coding upstream 435119 42337245 ~ 42337549 (+)
XLOC_010184 NA non-coding upstream 676408 42090306 ~ 42096260 (+)
XLOC_010201 NA non-coding downstream 337275 43119050 ~ 43124236 (+)

Expression


Co-expression Network