XLOC_000102 (SLC29A4)


Basic Information

Item Value
gene id XLOC_000102
gene name SLC29A4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8601935 ~ 8610564 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000194
GGAGGGCGGGAGCCTCGAGAGAGAATGAAGGAGCAGAAAACCAGCATCCTCAGCTAATAACACCGACCGAAATCAACACCCTGGCTTATAATTAAAATCATTCGCTTGTGAGGGAGTGAATGACATTGGCACATCAGTCATGTATTCTGAGGAGTGGAGCAGGAATCGGCAGGGTAGAGAGAAGACTGTGATCACGAATTTCAGTTTTAGTCAGCTGCCAGAGGAGGAGAAGACGGGTAGGAGAAAACCTCACAGTGCTCATGACTCTGACGAATCCATTCCAGATGATCGATACCATAGCATCTACTTTGCCATGCTGCTGGCTGGTGTGGGCTTTCTACTGCCATACAACAGCTTTATCACTGATGTGGATTATCTCCATCGTAAATTCAAAGGCACCTCTATTGTGTTCGACATGAGTTTGACGTACATACTGGTGGCTCTCAGCGCTGTCATCGTGAACAACGCGCTGGTGGAGAGACTGAGTTTACATACTCGCATCTGTGTggGATACCTGTTTGCGTTGGGACCtttggtgtgtgtgagtgtatttgaCGTCTGGTTGGAGCTGTTCAACACTCAGCAGTCCTATGCTGTTACTCTGGCTGCGGTTGCCATTGTTGCATTTGGATGCACAGTGCAGCAGTCCAGTTTCTATGGTTACACAGGGATGCTGCCCAAGAGATACACGCAGGGTGTGATGACTGGAGAGAGCACTGCAGGAGTTATTGTTTCTCTGAGCCGGATTTTTACAAAGCTGCTGGTGGAGGATGAGAAGAACAACACTATTATCTTCTTCCTGTTCTCCGTCTCAATGGAGACGCTCTGTTTTCTGCTTCATGTGGTGGTTCGCCGAACACACTTTGTCCGTTATCACACCAGCAGAGCTCGCCAGAGCCACAGCTGGCTCAAAGGACAGATTAATAACGTTACGACACAAAAGCACAGCGGCTATCAGATACATTACGACAGCAGTGCAGAGGAAGAGGATGGAATGGCGTCAAGCATGGTTGACGATGCTGATGCGGTTAATCTGGGTAACGGTTCCCATGGAGATGGCATATACGTCAGATTCGATGTGCCTAAACCAGAAGCCAAAAGGAGCTGGATCAGTGTGAAGGAGCTGCTGGGTCGGAGGTGTGCTGTAGCCCGGGTGATCTGGCCATATATGCTTTCAATCTTGGTGACATATttcatcactctgtgtctgttcccTGGTTTGGAGTCAGAGTTGCACAACGATACACTGGGAGAATGGCTGCCTATCCTCACCATGGCTCTGTTCAACATGGCTGACTTTGTGGGCAAGATCTTGGCGGCGTGCCCATACGAGTGGGGTGGTGTGCAGCTGCTGGTGTGTTCGTGTTTGCGCGTTCTCTTCTTGCCCCTGTTTGTGATGTGTGTGTCGCCTGtgcagcgccccctgctggcacACCCTGCCTGGCCCTGCGGCCTGTCTGTGATGCTAGGTATCAGTAACGGATATCTTGGCTCTGTACCAATGATACAGGCAGCTGGCAAAGTGCCACTTCAGCAGCGAGAGGTGGCAGGAAACACCATGACTGTGTCGTACATGGCTGGACTGATGCTAGGGTCTGCAGTGTCTTACTCAACATACAGTCTGACCTCACAGGCACACTCCTCTCACACCACGCTGAAACTCAACAGCACACTCACGTTGCACAACTATATGCCTGGCCACTGAGGAGAATCCAGCACACATGAACATTGGTTTGTACAGGTGATGATTATGTAggactaaaaaaaaacatttccgaAGGCTATCCTGCT

Function

symbol description
slc29a4 Enables several functions, including efflux transmembrane transporter activity; monoamine transmembrane transporter activity; and neurotransmitter transmembrane transporter activity. Involved in several processes, including cation transport; export across plasma membrane; and monoamine transport. Part of apical plasma membrane and basolateral plasma membrane.

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:1901642 nucleoside transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008504 monoamine transmembrane transporter activity molecular_function
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070112-1932 Predicted to enable monoamine transmembrane transporter activity. Predicted to act upstream of or within nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC29A4 (solute carrier family 29 member 4).

Ensembl:

ensembl_id ENSDARG00000079873

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000194 True 1791 mRNA 0.50 11 8601935 8610564

Neighbor

gene id symbol gene type direction distance location
XLOC_000101 si:ch211-160d14.15 coding upstream 4920 8593560 ~ 8597015 (+)
XLOC_000100 NA coding upstream 11299 8587230 ~ 8590636 (+)
XLOC_000099 AL928650.4 coding upstream 15869 8579197 ~ 8586066 (+)
XLOC_000098 AL928650.2 coding upstream 24661 8575307 ~ 8577274 (+)
XLOC_000097 NA coding upstream 26878 8573777 ~ 8575057 (+)
XLOC_000103 fscn1b coding downstream 51966 8662530 ~ 8670486 (+)
XLOC_000104 NA coding downstream 83632 8694196 ~ 8702684 (+)
XLOC_000105 NA coding downstream 340310 8950874 ~ 8965939 (+)
XLOC_000106 NA coding downstream 356915 8967479 ~ 8976422 (+)
XLOC_000107 tlr2 coding downstream 373504 8984068 ~ 8988504 (+)
XLOC_000087 NA non-coding upstream 927706 7672121 ~ 7674229 (+)
XLOC_000084 NA non-coding upstream 1089173 7512529 ~ 7512762 (+)
XLOC_000111 NA non-coding downstream 518822 9129386 ~ 9132490 (+)
XLOC_000116 BX323038.1 non-coding downstream 667282 9277846 ~ 9285351 (+)
XLOC_000120 NA non-coding downstream 1276391 9886955 ~ 9914630 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00422911_00432735 NA coding CI01000300 null 422591 ~ 432772 (+)