XLOC_010210 (dpys)


Basic Information

Item Value
gene id XLOC_010210
gene name dpys
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44298902 ~ 44325688 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020212
CACACTTCTACTCAAACATAGAGACACAGTGCTTGGAAAACAAGCACATCTGTAGAAGATACAAAGCTTTTTTCTTATTTGTGCTTTAGTTAGTGAGTAAAAACATGACAGCACAAAGCTGTATTTTGATTAAAGGGGGGAAAGTGGTAAATGAGGATTTCTCTGTGATGGCAGACGTGTATATCGAAGATGGAGTTATCAGTGGTGTTGGAACAGATCTGCAGGTGGCCGCTGGCACACGGGTCATTGATGCCACACACAAACTGGTGCTGCCGGGTGGAATAGACTCTCACACTCACATGGAGCTGTCTTTCATGGGCACCACAACTGCGGATGACTTTCAGACCGGCACCCAGGCTGCGGTCGCAGGAGGAACGACCATGATCCTGGACTTTGTCATCGCACAGAAGGGGTGTTCGCTTCTGGAGGCCTATGAGCGCTGGAGGAGAACGGCTGACCCCAAAGTCTGCTGCGATTACTCCCTTCATATGGCAGTGACCTGGTGGGACGACACTGTCAAGAAAGAAATGGAGACTCTTGTTTCTGAAAAAGGCATCAACTCTTTTAAGATGTTTATGGCATACAAAGACCTCTACATGCTGCAAGACCTCGAGCTCTATGCTGTTTTCTCCACATGTAAAGAGATTGGGGCAATAGCTCAAGTCCATGCAGAGAATGGAGACCTTATTGCAGAGGGTGCAAAGCGTATGCTCTCTCTAGGCATCACGGGTCCCGAGGGGCATGAAATGTGTCGTCCAGAAGAAGTGGAGGCGGAGGCCACACAGCGTGCCATCACTATTGCTCATGCCACAAATTGCCCGCTTTATGTGGTACACGTCATGAGCAAATCTGCAGCGAAGGTGGTGGCTAATGCACGCAGAAATGGTCGATTGGTGTTTGGAGAGCCCATTGCGGCTGGACTGGGCACAGATGGCACTCACTATTGGCATGAGAACTGGGCTCATGCTGCTGGTTTTGTCATGGGCCCACCATTGAGACCAGATCCCAGTACCCCTGGATATCTGATGGACCTGCTGGCCAATGATGATCTAAGCGTAACAGGAACAGATAACTGCACATTCTCTGTGTGCCAGAAAGCCCTTGGGAAAGATGACTTCACTAAAATCCCAAATGGAGTCAATGGTGTTGAAGACCGCATGTCTGTTATATGGGAGAAGGGAGTGCACAGCGGAAAAATGGATGAAAACCGGTTTGTAGCAGTCACCAGTACTAACGCAGCAAAAATCTTCAACCTTTATCCTCGAAAAGGGAGAATTGCTAAAGGCTCTGATGCAGACTTGGTCATATGGGACCCAAAGGCCAGCAGAGTGATTTCAGCAAAGACTCACCACCAGGCTGTGGATTATAACATCTTTGAGGGAATGCTGTGTCATGGGGTTCCAGTGGTCACAATTTCCAGGGGGAAAGTGGTTTATGAAAATGGCAAACTGTTCACAAAGCCGGGTGAGGGACGATACATTCCGCGCAAACCCTTTGCTGAATTTGTGTACAAGAGAATAAATCAACGGGAAAAGgttGGAACTCCGAGTGCTGTATGCAGAGAACCATACACTGGAGAAATCATATCTATTGGTCTAAAACAATAGTCCTGAATCATGGAGGAAAACTGTTTTACAACAAAGATGGTTGTGCAGTAcgtgtacattttttaaatgtaaggctgcagTTAAAGCCAAAGAATTAATTACAGTCTAATGCCACAGAAGAAACTTCTAAATCCCCAAagaacttttgaaaaacacagaaAGTATCACACTGCTCCATAAAACTGTTTTAAAGACACTTAAACTTTACACCGATCACTAGAGCACTAACTCaatcactttccttcagctttctAGAACAAAATACACacccagacaaaagtcttgtcgcctatccaggttttaagaacaacaaataataacctgacttctagttgatcacttggtatgaaaagtggcttatgtgaaaggcaaaggcctcaagattacgcttattttaccaaaataaaatatgatcatgccttgatttttaatgatttaactaGGAGAGTAAGGTCTGCTTAAGTGCTTAAGTcttatttaacagaaataatgtacggTATACAATAtatagtcatggtgcagtggaaaaagaatgaatattgtgtatgactcccatgatcttggagggctgcatccatacatctctgcaatgactcaaataactgattaataaagtcatctggaaaggcaaagaaagagttcttgcaTGACTCCCGtggttcatcaagattctttgaattcatcttaaatgcctcctccttcatcttaccccacacaatctcaataatgtttatatcttgtgactgagctggccaactctggagcaccttgaccttctttgctttaggAACTTTGAtttagaggctgaagtatgagaaggtttgctatcttgctgaagaatttgccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgattcctcaggctgttgatgttgccattcactctgcaaaTTTCTCACAAGCCTCTATACTGAATGTCATTAaataaaccatgatttttccttgacttatttctgtgagaatctagggtccatgtgagttccaataggccttctgcagtatttgtgataatcaagttattatttgttgcccttACAACTGTTATCGACAACAAGATATTTGTCAGGTAGttattacgccccaagtctaggggaaacgaaaagggcataataaacg
>TCONS_00020213
GGTGCAAAGCGTATGCTCTCTCTAGGCATCACGGGTCCCGAGGGGCATGAAATGTGTCGTCCAGAAGAAGTGGAGGCGGAGGCCACACAGCGTGCCATCACTATTGCTCATGCCACAAATTGCCCGCTTTATGTGGTACACGTCATGAGCAAATCTGCAGCGAAGGTGGTGGCTAATGCACGCAGAAATGGTCGATTGGTGTTTGGAGAGCCCATTGCGGCTGGACTGGGCACAGATGGCACTCACTATTGGCATGAGAACTGGGCTCATGCTGCTGGTTTTGTCATGGGCCCACCATTGAGACCAGATCCCAGTACCCCTGGATATCTGATGGACCTGCTGGCCAATGATGATCTAAGCGTAACAGGAACAGATAACTGCACATTCTCTGTGTGCCAGAAAGCCCTTGGGAAAGATGACTTCACTAAAATCCCAAATGGAGTCAATGGTGTTGAAGACCGCATGTCTGTTATATGGGAGAAGGGAGTGCACAGCGGAAAAATGGATGAAAACCGGTTTGTAGCAGTCACCAGTACTAACGCAGCAAAAATCTTCAACCTTTATCCTCGAAAAGGGAGAATTGCTAAAGGCTCTGATGCAGACTTGGTCATATGGGACCCAAAGGCCAGCAGAGTGATTTCAGCAAAGACTCACCACCAGGCTGTGGATTATAACATCTTTGAGGGAATGCTGTGTCATGGGGTTCCAGTGGTCACAATTTCCAGGGGGAAAGTGGTTTATGAAAATGGCAAACTGTTCACAAAGCCGGGTGAGGGACGATACATTCCGCGCAAACCCTTTGCTGAATTTGTGTACAAGAGAATAAATCAACGGGAAAAGgttGGAACTCCGAGTGCTGTATGCAGAGAACCATACACTGGAGAAATCATATCTATTGGTCTAAAACAATAGTCCTGAATCATGGAGGAAAACTGTTTTACAACAAAGATGGTTGTGCAGTAcgtgtacattttttaaatgtaaggctgcagTTAAAGCCAAAGAATTAATTACAGTCTAATGCCACAGAAGAAACTTCTAAATCCCCAAagaacttttgaaaaacacagaaAGTATCACACTGCTCCATAAAACTGTTTTAAAGACACTTAAACTTTACACCGATCACTAGAGCACTAACTCaatcactttccttcagctttctAGAACAAAATACACacccagacaaaagtcttgtcgcctatccaggttttaagaacaacaaataataacctgacttctagttgatcacttggtatgaaaagtggcttatgtgaaaggcaaaggcctcaagattacgcttattttaccaaaataaaatatgatcatgccttgatttttaatgatttaactaGGAGAGTAAGGTCTGCTTAAGTGCTTAAGTcttatttaacagaaataatgtacggTATACAATAtatagtcatggtgcagtggaaaaagaatgaatattgtgtatgactcccatgatcttggagggctgcatccatacatctctgcaatgactcaaataactgattaataaagtcatctggaaaggcaaagaaagagttcttgcaTGACTCCCGtggttcatcaagattctttgaattcatcttaaatgcctcctccttcatcttaccccacacaatctcaataatgtttatatcttgtgactgagctggccaactctggagcaccttgaccttctttgctttaggAACTTTGAtttagaggctgaagtatgagaaggtttgctatcttgctgaagaatttgccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgattcctcaggctgttgatgttgccattcactctgcaaaTTTCTCACAAGCCTCTATACTGAATGTCATTAaataaaccatgatttttccttgacttatttctgtgagaatctagggtccatgtgagttccaataggccttctgcagtatttgtgataatcaagttattatttgttgcccttACAACTGTTATCGACAACAAGATATTTGTCAGGTAGttattacgccccaagtctaggggaaacgaaaagggcataataaacgaagaacaaacaaa

Function

symbol description
dpys Predicted to enable dihydropyrimidinase activity. Predicted to be involved in pyrimidine nucleobase catabolic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in dihydropyrimidinase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human DPYS (dihydropyrimidinase).

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004157 dihydropyrimidinase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko00410 beta-Alanine metabolism
ko00770 Pantothenate and CoA biosynthesis
ko00983 Drug metabolism - other enzymes
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-070508-1 Predicted to enable dihydropyrimidinase activity. Predicted to be involved in pyrimidine nucleobase catabolic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in dihydropyrimidinase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human DPYS (dihydropyrimidinase).

Ensembl:

ensembl_id ENSDARG00000079543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020212 False 2759 mRNA 0.43 9 44298902 44325675
TCONS_00020213 True 2077 mRNA 0.42 6 44314097 44325688

Neighbor

gene id symbol gene type direction distance location
XLOC_010209 NA coding upstream 480337 43765979 ~ 43818565 (+)
XLOC_010208 NA coding upstream 611334 43687153 ~ 43687568 (+)
XLOC_010207 sqlea coding upstream 885609 43401005 ~ 43413293 (+)
XLOC_010206 rnf144b coding upstream 906447 43368572 ~ 43392455 (+)
XLOC_010205 ccdc127a coding upstream 948397 43347966 ~ 43350505 (+)
XLOC_010211 CR925804.2 coding downstream 279638 44605326 ~ 44605440 (+)
XLOC_010212 zgc:101716 coding downstream 352614 44678302 ~ 44687969 (+)
XLOC_010213 CR925804.1 coding downstream 378684 44704372 ~ 44705154 (+)
XLOC_010214 upk1a coding downstream 442673 44768361 ~ 44780744 (+)
XLOC_010215 cd22 coding downstream 580636 44906324 ~ 44917748 (+)
XLOC_010201 NA non-coding upstream 1174666 43119050 ~ 43124236 (+)
XLOC_010199 NA non-coding upstream 1250623 43041505 ~ 43048279 (+)
XLOC_010198 NA non-coding upstream 1397162 42897582 ~ 42901740 (+)
XLOC_010216 FP085399.1 non-coding downstream 877402 45203090 ~ 45206236 (+)
XLOC_010217 FP016247.1 non-coding downstream 891619 45217307 ~ 45273719 (+)
XLOC_010220 NA non-coding downstream 1130292 45455980 ~ 45691220 (+)

Expression


Co-expression Network