XLOC_010215 (cd22)


Basic Information

Item Value
gene id XLOC_010215
gene name cd22
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44906324 ~ 44917748 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020219
ACTGATTTCACTGAAGAAACAATATCTTTATGTCTGCCATGCTTTAAATGCAACATAGGCTATTATCGTCTTGCCATAAAGTGAAGAAATAAGGTAACAAGCACAGATTTAGGGAAGTTTTCCCCAGGATGGAACAAGGATATCCGTTTATTGATGCAATAAGTATTTTCTGAATGGTCTTTATATTCTTGTGGGGCAATACTGAAGTGTACTGATAAGTCTAAAAGAGACAAGTGTGTTTTCTACTGAAGGGACAGCATGATTTACATGATCATATTCCTGCAAGGGCTTCTATCAGCTGCTGTGGCTTCATGGTCAGTTTCATATGATCCAAAAGGAATGTGTGTATTTGAAGGATCTTCGGTGGATTTCAGCTGTTTATTTGATTATCCGGATTATCTCAAACTAACAGTAACAAAATGGTTCAGACCAGGCAAAAATCAGAAACAGGATGGATCACAGCAGGGAATAACTGTCCATCACTCAAACATAGCACTGATCAGCTGGCCGTATAAAGGCAGAACAGCATACGccaaccaaaacaaaaactgctcattGCGGTTGCGAAATGTCTCCAAACGTGACATCGGAAGATATTTCTTTCGCATTGAAACAAATGATTATTATGAAAAATTCACAGGATCTGGTGGCATACAGCTGAAAGTTGCAGTTTTACCTCTCAGAGTAATCGTGAAAACACAAAAGGCGAGTGAACAGATTGATGAAGGAGACTCTGTGACACTGACCTGCAGCGCAGAAAACTGTACACCGACAGAAGAGTCGTTTCTCTGGTTTAAAAACCACCTTCTGCTTCCACAAGCCACTGGGAATGAGCTCAGGATCTCTTCTGTCTCGCACAGCGATGCTGGAAACTATTCATGCGGCCTGAAGAACACCAACACAACTTTATCTGCTCAAACATTACTGGACGTCAGATATCAGCCAAAAGATGTCGAAATCAGCGTTTCATCATCTGAGGAAATACAAGAAGGAAACCCGCTGACTCTGACCTGCAAGAGCAAAGCCAATCCTGCAGTGACACACTACAGCTGGTTCAAGATCACAGACGCAAACATGTCTTCTGTAGGATCTGGCAGTGAATTAACCATTAGATCTGCCAGTCTGCAGGATGCTGGCCTTTACTTCTGCACTGCCACCAATCACATCGGCACACAGAAATCTACTGTCAAAGCACTCAAAGtgGCAAGTGATCGTCATTTCTTGCTGAGCGCATCAGCGGTGTTTTTGTTTGTAATGGCTATGCTGTTGGTCCTGTTTGTGCTCTTTGTAAGGAAGAAACTGTTTACGTCACAAAAGCAGACTGCAGAACAGATGCCTGCAGTCACTGAAGTGATTTACGAAAACCTGAGAAAAACAGAGTCTGAAACAAACACTTCAACTGTGATTTATGCAGATCTGAAGCTTCCTCCATCAAACTCAGACAGACCATGCTGCAACAGTCAAGAGTGCGACTCGGTCATCTACAGCCTTATAATAACAACGACTGAATAAATCTCCATAATAAATAATGATGAGCTACAACAAAAACAGTATAGTATATATGTTTCTCTTTTATTCAAAAAACTCAATTTGATGATGAATACATTTACATAGTTAAAAAAAGAGTCGCACATTGAGTATAAAAGgattaaagaaataatatatacaatGTACAGCGAAGATCCAAAAAATAATACATCTATGTACAAATGTATGCATGCGTCTGTATTTACAACCACATTTCACATCATCACTTGACTAAAGAAaatcattcatgtatttatgaaACAATATATGATGTTAAACTATTCAATAAAATGCCAAGTAATATCAA

Function

symbol description
cd22 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in granulocyte; head; and intestine.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04640 Hematopoietic cell lineage
ko04662 B cell receptor signaling pathway
ko04090 CD molecules
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-050522-521 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in granulocyte; head; and intestine.

Ensembl:

ensembl_id ENSDARG00000053005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020219 True 1834 mRNA 0.39 8 44906324 44917748

Neighbor

gene id symbol gene type direction distance location
XLOC_010214 upk1a coding upstream 125580 44768361 ~ 44780744 (+)
XLOC_010213 CR925804.1 coding upstream 201170 44704372 ~ 44705154 (+)
XLOC_010212 zgc:101716 coding upstream 218355 44678302 ~ 44687969 (+)
XLOC_010211 CR925804.2 coding upstream 300884 44605326 ~ 44605440 (+)
XLOC_010210 dpys coding upstream 580636 44298902 ~ 44325688 (+)
XLOC_010216 FP085399.1 coding downstream 285342 45203090 ~ 45206236 (+)
XLOC_010217 FP016247.1 coding downstream 299559 45217307 ~ 45273719 (+)
XLOC_010218 dnase2 coding downstream 419915 45337663 ~ 45357518 (+)
XLOC_010219 phf1 coding downstream 507159 45424907 ~ 45443805 (+)
XLOC_010220 NA coding downstream 538232 45455980 ~ 45691220 (+)
XLOC_010209 NA non-coding upstream 1087759 43765979 ~ 43818565 (+)
XLOC_010208 NA non-coding upstream 1218756 43687153 ~ 43687568 (+)
XLOC_010201 NA non-coding upstream 1782088 43119050 ~ 43124236 (+)
XLOC_010221 CU062666.1 non-coding downstream 670466 45588214 ~ 45588330 (+)
XLOC_010222 CU459129.1 non-coding downstream 748987 45666735 ~ 45666852 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_02147653_02152768 NA coding CI01000027 null 2147557 ~ 2153486 (-)