XLOC_010219 (phf1)


Basic Information

Item Value
gene id XLOC_010219
gene name phf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45424907 ~ 45443805 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020224
gagagaaagagagagaggcagagatgatgatgatggcgTCTCTCTCGGGCTGAATCTCCTGACGAGCACACGCTTGAAAGCATCAAACCGAGAGACATGAAGacggacagagagagagagagacggacggacggacagacggttGCGCACTGACGCGCGTTTGATCCGCCGCGACTCTCCAAAACGCGCCGATTATTCGGGACAGTGATTGAGACGCAGAACAACACCGGTCACCATCAGGCGTTTCATGTGAGACTGACATCTCTTCCCCGTCTCTGTGACCCCAGCAGAGCCGATCACTCCACACAGGATGGGGGGAGTCAGTGAAGGAGAGGATGTTTTGGCCAGGTGGAGCGATGGACTTTTATATCTCGGCAATGTCAAACGAGTGGACAGTGTCAAGCAGTGCTGTTTGATCAGATTTGAGGATAACTCTGAATTCTGGGTCCTCAGGAAAGACATCCACTCGTTCTCTTCAGGAGGAGAGGAGGTTTGCTGTATCTGTGATTCGCCACCTCTTAAAGAACCTCTCGTAAACTGCCTCAAATGTCGCCACGGTTATCATCCAGAGTGCCATACCCCGTCCATAGAGCCTGAAGTCGACCCCAACAGCTGGATTTGTCGCCAATGTGTCTTCGCAGTTGCAACCAAGAGAGGAGGAGCGTTGAAAAGAGGACGTTTCGCTCGGCTCATGCAGATCATGAAAGTACGCTTGCCCTATCAGCTCTCATCTCTGGACTGGGACCCTCAGCACTTGACCAACCAGCAGCAGTGTTACTGCTATTGTGCTGGGCCTGGAGAGTGGAATCTAAAGATGCTGCAGTGTGGCAGTTGTGGACAGTGGTTTCATGAAGCCTGCACTCAGTGCCTGAGCAAACCTCTTCTGTATGGAGATCGCTTTTATCAGTTCCAGTGCTCCGTCTGCAGCAATGGAGCAGAGAGCGTCCAGAGGCTTCCCATGACCTGGGTAGATTTGGCCCATTTGGTGCTGTATCACCTCTCTCTGTGCTGCAAGAGGAAGTACTTCGATTTCGATCATGAAATCATGTCGTTTGCAAATGAGAACTGGGAGTCTTTGCTTCTTGGCACGCTGTCAGACACGCCGAGGCAAGACCGTTGCCAAAACCTGCTCAACGCTTTAAACTCCCACAAAGACAGGTTCGTCTCGGGGAAGGAAATCAAGAAGAAGAAATGTCTCTTCGGGCTCCAGGTTCGAGCTCCTCCCCCTCTGTCATCCGACCAATCACCTTTCATCGCCGAACAGCCAATTAACATCACCCACAGGAGAAG
>TCONS_00020225
TCTGTGACCCCAGCAGAGCCGATCACTCCACACAGGTACATCCCGTGCACGTATGATCTGCCATTCAGTGAAGGAGAGGATGTTTTGGCCAGGTGGAGCGATGGACTTTTATATCTCGGCAATGTCAAACGAGTGGACAGTGTCAAGCAGTGCTGTTTGATCAGATTTGAGGATAACTCTGAATTCTGGGTCCTCAGGAAAGACATCCACTCGTTCTCTTCAGGAGGAGAGGAGGTTTGCTGTATCTGTGATTCGCCACCTCTTAAAGAACCTCTCGTAAACTGCCTCAAATGTCGCCACGGTTATCATCCAGAGTGCCATACCCCGTCCATAGAGCCTGAAGTCGACCCCAACAGCTGGATTTGTCGCCAATGTGTCTTCGCAGTTGCAACCAAGAGAGGAGGAGCGTTGAAAAGAGGACGTTTCGCTCGGCTCATGCAGATCATGAAAGTACGCTTGCCCTATCAGCTCTCATCTCTGGACTGGGACCCTCAGCACTTGACCAACCAGCAGCAGTGTTACTGCTATTGTGCTGGGCCTGGAGAGTGGAATCTAAAGATGCTGCAGTGTGGCAGTTGTGGACAGTGGTTTCATGAAGCCTGCACTCAGTGCCTGAGCAAACCTCTTCTGTATGGAGATCGCTTTTATCAGTTCCAGTGCTCCGTCTGCAGCAATGGAGCAGAGAGCGTCCAGAGGCTTCCCATGACCTGGGTAGATTTGGCCCATTTGGTGCTGTATCACCTCTCTCTGTGCTGCAAGAGGAAGTACTTCGATTTCGATCATGAAATCATGTCGTTTGCAAATGAGAACTGGGAGTCTTTGCTTCTTGGCACGCTGTCAGACACGCCGAGGCAAGACCGTTGCCAAAACCTGCTCAACGCTTTAAACTCCCACAAAGACAGGTTCGTCTCGGGGAAGGAAATCAAGAAGAAGAAATGTCTCTTCGGGCTCCAGGTTCGACGTCTACTGAAAACACCATCAACAGAGACCCAGGAAAGGGCTACAGACATGCGGATGAACTGCTAG

Function

symbol description
phf1 Predicted to enable metal ion binding activity and methylated histone binding activity. Predicted to act upstream of or within cellular response to DNA damage stimulus and regulation of histone methylation. Orthologous to human PHF1 (PHD finger protein 1).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031060 regulation of histone methylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0035064 methylated histone binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-100922-277 Predicted to enable metal ion binding activity and methylated histone binding activity. Predicted to act upstream of or within cellular response to DNA damage stimulus and regulation of histone methylation. Orthologous to human PHF1 (PHD finger protein 1).

Ensembl:

ensembl_id ENSDARG00000057439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020224 False 1290 mRNA 0.52 11 45424907 45440643
TCONS_00020225 True 1026 mRNA 0.51 12 45425181 45443805

Neighbor

gene id symbol gene type direction distance location
XLOC_010218 dnase2 coding upstream 67389 45337663 ~ 45357518 (+)
XLOC_010217 FP016247.1 coding upstream 151188 45217307 ~ 45273719 (+)
XLOC_010216 FP085399.1 coding upstream 218671 45203090 ~ 45206236 (+)
XLOC_010215 cd22 coding upstream 507159 44906324 ~ 44917748 (+)
XLOC_010214 upk1a coding upstream 644163 44768361 ~ 44780744 (+)
XLOC_010220 NA coding downstream 12175 45455980 ~ 45691220 (+)
XLOC_010221 CU062666.1 coding downstream 144409 45588214 ~ 45588330 (+)
XLOC_010222 CU459129.1 coding downstream 222930 45666735 ~ 45666852 (+)
XLOC_010223 smg5 coding downstream 249608 45693413 ~ 45734213 (+)
XLOC_010224 paqr6 coding downstream 295388 45739193 ~ 45782607 (+)
XLOC_010213 CR925804.1 non-coding upstream 719753 44704372 ~ 44705154 (+)
XLOC_010211 CR925804.2 non-coding upstream 819467 44605326 ~ 44605440 (+)
XLOC_010209 NA non-coding upstream 1606342 43765979 ~ 43818565 (+)
XLOC_010225 NA non-coding downstream 343237 45787042 ~ 45812324 (+)
XLOC_010228 NA non-coding downstream 544626 45988431 ~ 45990842 (+)

Expression


Co-expression Network