XLOC_001022 (ubn1)


Basic Information

Item Value
gene id XLOC_001022
gene name ubn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9258931 ~ 9278037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001623
AGCAACGCACACTTTCCTCTGCCCGCCATACCTCCAATCCAGACTATCACTGACCAAACTGTCAAACCGGGTTTACTTGCGCCAAACCCGGCGGTAGAATCGCCACCCCCTCCACATGCTGCAACCAGAGTGGAATTAAAGCTGTTCGAGCCGGATGAACAACGCTGCCCGGAGTTTAACTACCCGGATTTGATCAGCACAAAGGAAACCcctgagaaaacaaaacaaacattcgACGAAGTGGTAGAAGACACAGTTAGAGATGAACTGGAGGCACTTGCAAAAAAATTTGAAGCCAAATATTGTTCTTGCTTAGGGTGGAGCCGGCAAAAGGAAAAAAGACAGATTACAGGACCTGGTGGATATGGGCTTTGGTTACGATGAGTCCGATTCATTCATTGATAACTCTGAGGCTTATGACGAGCTCGTCCCAGCTTGTCTGACCACCAGATATGGAGGCTTTTACATCAACTCTGGGACTCTGCAGTTCCGGCCAGCTTCTGATGAAGGAGAGAACGAGAATGATTTTGAGGACAGTGGCCTTAAACCCAAGAAACGAAAGCTTAAGCAAGGAAAAGACAAgaagataatgaaaaagaaaagagatGAATATGGGCTTGCTAAGAAGGATGAAGAGGAATTCACAAAGAGCACCCCGCCAGATAAATCTTCtgcaaagaagaagaaaaacaagaaGCCATTAAGTATCGATAAGATGCTGAAGAAGTTCCATAAGGAGAAGCTTCAGCAGATGAAGGAGTTTAATTCTAGAGAGAAAGAACTGCATTCTCTCAATGCCATACACGCAGGACCCGCCATACAAGCGGAGATTCAGGAAGCACACGTTTCATCTGACCCTCTTTTCTCACTCATCGGCTCTGCCAGTGCAGACGACCTTCTGCAAGCAGTCAAAGCAGCAGAGCAAGACTTTGACCTGGATGATCTGTTAGGCGAGCCGCAGAACATCTGCCCTCCAGGTTTGGAGGAGGTGAACGGAGAGGCTCTGGTAGTGTCTGTCGCTGAGAAACCACCTGCATTACTTCCCGATGGTCTACCGCCTATGCTAGAGCAACACATTAAGGACATTTCACAGgcTGCCAAGAACATTGAAGGACAGAACAAGATGGagattttgtcttcagaactcAACAGTGTTTTACTAGATGTGGAAGTAAACTCTAAGCAGCTTGGTGGGAAAGTGCGTTCCAGAATCTTCTCCTACTTGGCATCACAGCTGTCCTGCAGCAAAGGCACACTGGTTAAAAGAGCCAAAAAGCTCCACAGTCAACAGCAGGATGAGCAGATGCAGGAGCTGCTGAAGAAGCTGGAGAATGCTGTCGCCAGATCCATGCCAGAGCAGATCACCCGCTTCCAGAATCACTGCCAGGCTCACTCTGAAGCCAGAGCTGCCAAACTCGAGGCTGAGAAAGAGCGAGCGATTGATGGATCTGATGAGGAAGAAGAAGAGAGGAGTGGAAAACGGGTATTTGGGCCTCGCAAGCGATTCAGATGGAATGAAGAGATCAGGGAGCTGCTCTGTGAGATTGTCAATGTGAAAATGATGATTTATGATTCAGAGTCGCCCTCCTGCTCTAGTTTAGAGGAGTATCTGAAAGCGTTCCTGGAGGCGGATGTTAAATCACTTTGGCCCAAAGGGTGGATGCAGTCCAGGATTCTGCTTATAGAAACCCGAAAAGCACATGGTCACATTACTGGTGTTGTGGCAAGGAAGAAACCAATAGGCACAACAAAACTAAAGAAGGCCAGTGGCGCCCCTGAGGACAGTAGGAATGTCAATGAAGTTCAGGGTCCGCCCGCTCTGAAACGCAAACGTCTGGGTTTACCTGCAAACATGCAGCCTGAAGCTGCAGCCACGCTGAGCACCACTGCCAAAACACCATCCAACAGTTTTTCCACGCAGCCCTGCATCCAGAGCCACAGATCTTCAGCCGCTGCCAGCAACAAAATGGAGAAGCAGAGGAGTCCGGTCAGCGCTGAGGCTGCTGGGGATTCAGAGGCTGGAGAGAAGGCTAGTCTGAAGCTGACGCTGGTGGCTCCCCCAGATGGAGCGCAGGGTCACTGTGCTTCAATGGTGCAGGGGGTGGCCAGACTGCTGACCACCACCGCCTCCAGAGGACACACACACGCCTCTATGGCAGCCGCCGCGGGTGAGATCTCCTGTGGGACTCCAGC
>TCONS_00001624
AGCAACGCACACTTTCCTCTGCCCGCCATACCTCCAATCCAGACTATCACTGACCAAACTGTCAAACCGGGTTTACTTGCGCCAAACCCGGCGGTAGAATCGCCACCCCCTCCACATGCTGCAACCAGAGTGGAATTAAAGCTGTTCGAGCCGGATGAACAACGCTGCCCGGAGTTTAACTACCCGGATTTGATCAGCACAAAGGAAACCcctgagaaaacaaaacaaacattcgACGAAGTGGTAGAAGACACAGTTAGAGATGAACTGGAGGCACTTGCAAAAAAATTTGAAGCCAAATATTGTTCTTGCTTAGGGTGGAGCCGGCAAAAGGAAAAAAGACAGATTACAGGACCTGGTGGATATGGGCTTTGGTTACGATGAGTCCGATTCATTCATTGATAACTCTGAGGCTTATGACGAGCTCGTCCCAGCTTGTCTGACCACCAGATATGGAGGCTTTTACATCAACTCTGGGACTCTGCAGTTCCGGCCAGCTTCTGATGAAGGAGAGAACGAGAATGATTTTGAGGACAGTGGCCTTAAACCCAAGAAACGAAAGCTTAAGCAAGGAAAAGACAAgaagataatgaaaaagaaaagagatGAATATGGGCTTGCTAAGAAGGATGAAGAGGAATTCACAAAGAGCACCCCGCCAGATAAATCTTCtgcaaagaagaagaaaaacaagaaGCCATTAAGTATCGATAAGATGCTGAAGAAGTTCCATAAGGAGAAGCTTCAGCAGATGAAGGAGTTTAATTCTAGAGAGAAAGAACTGCATTCTCTCAATGCCATACACGCAGGACCCGCCATACAAGCGGAGATTCAGGAAGCACACGTTTCATCTGACCCTCTTTTCTCACTCATCGGCTCTGCCAGTGCAGACGACCTTCTGCAAGCAGTCAAAGCAGCAGAGCAAGACTTTGACCTGGATGATCTGTTAGGCGAGCCGCAGAACATCTGCCCTCCAGGTTTGGAGGAGGTGAACGGAGAGGCTCTGGTAGTGTCTGTCGCTGAGAAACCACCTGCATTACTTCCCGATGGTCTACCGCCTATGCTAGAGCAACACATTAAGGACATTTCACAGgcTGCCAAGAACATTGAAGGACAGAACAAGATGGagattttgtcttcagaactcAACAGTGTTTTACTAGATGTGGAAGTAAACTCTAAGCAGCTTGGTGGGAAAGTGCGTTCCAGAATCTTCTCCTACTTGGCATCACAGCTGTCCTGCAGCAAAGGCACACTGGTTAAAAGAGCCAAAAAGCTCCACAGTCAACAGCAGGTTTTGAGAACTGCATGACACCTTAacactaaaataaatgaattcaatgtTGACAATTTCTTA
>TCONS_00001625
AGTCTGAGCAATATGGCCGCGCCAAAAAGAGTTCATCTCACCGCATTATCAAGCAACGCACACTTTCCTCTGCCCGCCATACCTCCAATCCAGACTATCACTGACCAAACTGTCAAACCGGGTTTACTTGCGCCAAACCCGGCGGTAGAATCGCCACCCCCTCCACATGCTGCAACCAGAGTGGAATTAAAGCTGTTCGAGCCGGATGAACAACGCTGCCCGGAGTTTAACTACCCGGATTTGATCAGCACAAAGGAAACCcctgagaaaacaaaacaaacattcgACGAAGTGGTAGAAGACACAGTTAGAGATGAACTGGAGGCACTTGCAAAAAAATTTGAAGCCAAATATGGTGGAGCCGGCAAAAGGAAAAAAGACAGATTACAGGACCTGGTGGATATGGGCTTTGGTTACGATGAGTCCGATTCATTCATTGATAACTCTGAGGCTTATGACGAGCTCGTCCCAGCTTGTCTGACCACCAGATATGGAGGCTTTTACATCAACTCTGGGACTCTGCAGTTCCGGCCAGCTTCTGATGAAGGAGAGAACGAGAATGATTTTGAGGACAGTGGCCTTAAACCCAAGAAACGAAAGCTTAAGCAAGGAAAAGACAAgaagataatgaaaaagaaaagagatGAATATGGGCTTGCTAAGAAGGATGAAGAGGAATTCACAAAGAGCACCCCGCCAGATAAATCTTCtgcaaagaagaagaaaaacaagaaGCCATTAAGTATCGATAAGATGCTGAAGAAGTTCCATAAGGAGAAGCTTCAGCAGATGAAGGAGTTTAATTCTAGAGAGAAAGAACTGCATTCTCTCAATGCCATACACGCAG

Function

symbol description
ubn1 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human UBN1 (ubinuclein 1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-28 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human UBN1 (ubinuclein 1).

Ensembl:

ensembl_id ENSDARG00000063169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001623 False 2193 mRNA 0.50 15 9258931 9277986
TCONS_00001624 False 1357 mRNA 0.46 8 9270015 9277986
TCONS_00001625 True 847 mRNA 0.45 6 9273208 9278037

Neighbor

gene id symbol gene type direction distance location
XLOC_001021 zgc:136472 coding downstream 8988 9234928 ~ 9249943 (-)
XLOC_001020 si:dkeyp-57d7.4 coding downstream 26979 9230244 ~ 9231952 (-)
XLOC_001019 gng13a coding downstream 30924 9227081 ~ 9228007 (-)
XLOC_001018 BX004779.1 coding downstream 60965 9197859 ~ 9197966 (-)
XLOC_001017 ern2 coding downstream 63171 9169807 ~ 9195760 (-)
XLOC_001023 AL954703.1 coding upstream 30234 9308271 ~ 9321931 (-)
XLOC_001024 NA coding upstream 142787 9420824 ~ 9422275 (-)
XLOC_001025 micall2b coding upstream 181723 9459760 ~ 9486214 (-)
XLOC_001026 si:ch73-12o23.1 coding upstream 221608 9499645 ~ 9527200 (-)
XLOC_001027 ugt5b5 coding upstream 348240 9626277 ~ 9629724 (-)
XLOC_001016 BX004779.2 non-coding downstream 96294 9157310 ~ 9162637 (-)
XLOC_001015 NA non-coding downstream 119771 9138638 ~ 9139160 (-)
XLOC_001010 NA non-coding downstream 176159 9081842 ~ 9082772 (-)
XLOC_001009 NA non-coding downstream 278260 8978905 ~ 8980671 (-)
XLOC_001031 NA non-coding upstream 638339 9916376 ~ 9918812 (-)
XLOC_001037 CR854964.1 non-coding upstream 992210 10270247 ~ 10272725 (-)
XLOC_001044 NA non-coding upstream 1393815 10671852 ~ 10682149 (-)

Expression


Co-expression Network