XLOC_010220


Basic Information

Item Value
gene id XLOC_010220
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45455980 ~ 45691220 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022026
CAGACATTCATTGGCTTTTAGATCGATCTACACTGGCAAACGCGTGCgcgcacactctcacacacacacatccacacgcGCGCGCACGCTCCCTTCACCgcccccttctctctctccctctctttttctATCTCTCCCTCCGTTCTCCTCTTCTCCATCACTCTTGTTTTGCGCGTGTGTGATATGTGATGCGATACACGGGCTCTAACCATTCCAATGGCTCTCGTCGACCATGGACGGTGATTTTATTTCCATTTCTCTGTTCGCGTCACGGGAATATCGCTCCAGCGTCGACGCAGTCCACGAGCACACGGGCTTTGCTCGCCTCCTCTGACTGCTGAAGGATATTTTCGCATGTCGAGAGACTGAAGAGACACTGAGAGCACGTTCAATGCCGTTGGAACATGTCATATGTTCCCTTTCAAGCGCATTAGAGCCGTGTAGCTGTAAGCCTGTCTTCAGCACGTCTCAGGCTTCATTTTCACGCTGGCTTACAGTCCTTTTGCTGGATGACCTAGGTTTAGCTGGAGAGGTTATCTGCGGGCCCAAATCACGACCCGTTTTCTCTCAGCGGAGCGACCCACACGCATGAAGACATATAAGGGAATACACAGAGGAGCGCTGCAGAAGCGTCGATTGATGGCTGCGTCATGTATTTATGCAGACGTGGATGGGAAAGATTGTAGCCCCAGACTGTCAGTGATTTATTCAGCATGTGGACTATTGAAAAATGCGGTACAATGCAAATATGCAAACTTCATTGAAGCCCTGCTGCTCCATATACTTGTTTTGACAGTTTATCTGGAGGTAAATGTAAAATAGATGCAGACGGACAGGGGGG
>TCONS_00022025
CAGACATTCATTGGCTTTTAGATCGATCTACACTGGCAAACGCGTGCgcgcacactctcacacacacacatccacacgcGCGCGCACGCTCCCTTCACCgcccccttctctctctccctctctttttctATCTCTCCCTCCGTTCTCCTCTTCTCCATCACTCTTGTTTTGCGCGTGTGTGATATGTGATGCGATACACGGGCTCTAACCATTCCAATGGCTCTCGTCGACCATGGACGGTGATTTTATTTCCATTTCTCTGTTCGCGTCACGGGAATATCGCTCCAGCGTCGACGCAGTCCACGAGCACACGGGCTTTGCTCGCCTCCTCTGACTGCTGAAGGATATTTTCGCATGTCGAGAGACTGAAGAGACACTGAGAGCACGTTCAATGCCGTTGGAACATGTCATATGTTCCCTTTCAAGGGCCCAAATCACGACCCGTTTTCTCTCAGCGGAGCGACCCACACGCATGAAGACATATAAGGGAATACACAGAGGAGCGCTGCAGAAGCGTCGATTGATGGCTGCGTCATGTATTTATGCAGACGTGGATGGGAAAGATTGTAGCCCCAGACTGTCAGTGATTTATTCAGCATGTGGACTATTGAAAAATGCGGTACAATGCAAATATGCAAACTTCATTGAAGCCCTGCTGCTCCATATACTTGTTTTGACAGTTTATCTGGAGGTAAATGTAAAATAGATGCAGACGGACAGGGGGG
>TCONS_00020226
CGCTCCCTTCACCgcccccttctctctctccctctctttttctATCTCTCCCTCCGTTCTCCTCTTCTCCATCACTCTTGTTTTGCGCGTGTGTGATATGTGATGCGATACACGGGCTCTAACCATTCCAATGGCTCTCGTCGACCATGGACGGTGATTTTATTTCCATTTCTCTGTTCGCGTCACGGGAATATCGCTCCAGCGTCGACGCAGTCCACGAGCACACGGGCTTTGCTCGCCTCCTCTGACTGCTGAAGGATATTTTCGCATGTCGAGAGACTGAAGAGACACTGAGAGCACGTTCAATGCCGTTGGAACATGTCATATGTTCCCTTTCAAGATGCGAGGTATGCCGTTCCCCCGTCCTACAGACCCCAGCCGTCGTTCGCTGCTGCTCCGTCATACGAGCAGGCCGACTGGAATCCTCGTCTGGGTGTGATCAGTGGAAATCAGCTCTACATGTTGGACCAGGAGGAGGTTCACCCTTTGTTGATGCGCGAGCGGCGCTCCGAGTCGCACAGGAACAAGCTGCTGCGACGGACGGTCAGTGTGCCTGTGGAGGCCAGGCACCATCCTGAAATGGACGCCGCTCGGCTCCGGCGGAAAAGCATCGCCACCGGGAAGCAGCCAAGCATGGAGATCCCACCCACTGCCCCCCCACAACCCTTCCGACAATCCGTGAGTAACCCACCTTTCCGTCCCCGGTCCCTCTCTCCATCCCTGTCCCTATCGCTGCCGTTCGCTCCATCGCCCCTGTCGCCCTCGCTGTCCCCGTCCCATTTACAGTCCCAAAAGCGAATCAGCACTCCTCCGCTGCCTcgttctctccctctctccccgAGCGTCTCTCTGACTCTCCCACCCTCTGTCCCGCTCTCCCACTGGGCTGCTGGTGAGTGGAAGGTTGTGGGTTCTAATCCAGGGACGGGATCCAGTGTGGCGGCACTGCCCTCTCTTGAGAGTTTCCTCAGTAGAAGACTGAAGGGGTCCATTAAACGGGCCAAGAGTCAGCCCAAGCTGGACCGAACCAGCAGCTTCCGCCACATGATCCTCCCTCGCTTCCGCAGCGCCGACCAGGAGCGGACTCGTCTGATGCAGAGCTTCAAAGAATCACACTCCCATGAGTCTTTGCTGTCTCCCAGCAGCGCAGCCGAGGCCTTGGATTTGACACTTGATGAAGACGCCATCATCAAGCCTGTTCACTCCAGTATATTGGGACAGGAGTACTGTTTCGAGGTGATAACTGCTTCAGGAACAAAGTGTTTTGCCTGTCGGTCGGCTGCGGAGCGAGACAAATGGATCGAGAATCTACAGAGAGCTGTCAAACCCAACAAAGACAACAGTCGGCGTGTCGACAACGTCCTGAAGCTGTGGATCATTGAGGCCCGTGAGCTCCCACCCAAAAAGCGCTATTATTGTGAACTGTGCTTGGATGACATGCTGTACGCTCGCACCACCAGCAAACCCCGTACCGACACTGTCTTCTGGGGTGAGCACTTTGAGTTCAACAACCTGCCTGCTGTCCGCAACCTCCGCCTTCATCTGTACAAAGAGACGGACAAGAAGAGACGCAAGGAGAAGAGCACGTACCTTGGCTTGGTCAGCATTCCCATTTCCAGCATCACTGGCCGTCAGTTTGTGGAGCAATGGTACCCCGTCATTCAGCCCAGTGTTCTGGCCAAGGGTGGCGGCGTCGGAGGAGGGAAGATCATCAATGCCTCGCTGCGGCTCAAGTCACGCTTTCAGACCATGAGCATCCTGCCGATGGAACTGTATAAAGAGTTCGCAGAGTACGTCACAAACAACTACCGGACGCTGTGTGCGGTCCTGGAGCCACTGCTGAGTGTCAAGAGCAAAGAAGAAGTGGCCTGTGCTCTGGTGCACATCCTACAGAGCACAGGGAAGGCCAAGGATTTTCTGTCAGACATGGCGATGTGTGAGGTGGATCGCTTCATCGACCGCGAGCACCTGATCTTCAGAGAAAACACCCTGGCCACCAAAGCCATAGAAGAGTACCTCAAACTCATCGGACACAAGTACCTCAAAGATGTTTTAGGTGATTTTATCCGAGCGCTGTATGAATCAGAGGAGAACTGTGAAGTGGACCCGATGCGAACTCCCCCTTCAATACTGCCCGAACATCAAGCCAACCTCCGGATGTGCTGTGAGCTCGCCCTCTGCAAAATCATCAACTCATATTGTGCGTTCCCGCGAGAGCTGAAGGAAGTGTTTGCATCATGGCGTGTCCGCTGTGCTGAGAGAGGAAGAGAAGACATTGCAGATCGACTGATCAGCGGCTCCCTCTTCCTGCGCTTCCTCTGTCCAGCCATCATGTCTCCATCTCTGTTCAACCTCACGCAGGAATATCCCGATGAGCAGACCTCACGAACACTCACACTCATCGCCAAAGTGGTCCAGAACCTCGCAAACTTCTCCAAGTTTGGCAGTAAGGAGGAGTACATGTGCTTCATGAATGAGTTTCTGGAGATGGAGTGGGGCTCCATGCAGCAGTTTCTCTATGAGATCTCCAATCTGGACAGTGTGAGCAATGCTGGGGCCTTCGAGGGCTACATTGACCTAGGCCGCGAGCTCTCCATCCTGCACAGTCTGCTCTGGGAGGTTATGGCTCAGCTGAGCAAGTCATCAATTAGGTCTTGGTTTATTGTGTCAAAGGATGCCATCATCAAACTTGGACCATTGCCCCGCCTCCTCAATGACATCAGCATGGCCCTCCGCAACCCTCACCTGCAGAggcagcccagtcatcagacagacagacagcctgcagagagacagacagaccgacTGCTGTCCCGACCCAGCTTCAACAGGGGCGTCTCGTCTGAGTTCCAGAATCTCATGATGAGAGACCTTAACAGTTCAGTGGAGATCACTCGTCTGCCCTCTCCAACTTCTGCCATGTCCAGCGGTGGAGCTCCTCCATCCCGTGCAGGAATGGCTGGGTTTGCGGACCGCGATCATCCTCACCGAGCCTCGTCTAAAGATGTTTTCTATGGTGCCCGTCCCCCACTGGCCCGCTCCAGTCCAGCGTACTGTACTAGCAGTTCAGATATTACTGATCCAGACCCAAAGGATTCCAGAATGAACAGCGTCTCTAACCTGCAGTCTATGGGGGACATGCTCAACTCTTCCCAGGCCTCGATTGCTGGCCTCGGCAGCTACGGTGGGCTCGCAGGCTTGGGTGGAGGCCTCGGAGGTCAGCTGCGAGCCGGAGGACGTATGTCGGCCGGATCTGGCGGTTCCAGTATGTCCGGGGGTCTGAGGTTGAGCCAGCTGAGCCAGATGGGAACCACTACCGACTCCCTgtcccagcagcagcagcagcaggccgCCGCCCTCCGCTTTCCCCTGTCCTTCCAGAACCCTCTGTTCCACCTCGCTGCTGACGGACCGCAGCTTCACCACCAGCACAGTCGAGCTCAGCCTCCTCCTCCGCTCCTGCTGGCCCCAGAGCCGGACGGTTCTCACCCTACTTATATCCCACAGTTTGCACATGGTGGTTTCTCCCGAAGTGAGGACCTCTCCACCCTCAGACCCGGCCCTCATCTGGGCCAGCCAAGTATTATTCATTCTCACAGCTACAGCGACGACTACAGCCGTCATAACCAGAGCGACTACGGGCGACGACAGATCTCCATGCACATGCAgGAGCAGCAGCAGATGGCAGGCATGGCATCGCAGACTGGCACATCTCATTCATCTCTCGCCACTCCTCCTTCCACTGTTCAACCTGTTCGTCAAAGCTCCATGGCTCCTCCCACGCAGCGCATGAAATCACAACCCTCACATCAGCTTTCTGTGAGCTCTGCCGCTGGTGCCCCTGCGTCCAAAACCAGGCCGCAGAGCGGAAACCTGCTCCAGTCCCCGGAGTCTGGCTTCGGGGGCCGGCAGCAGGGCCCTCGGCAGCAGCTGTCTGTCAAAGACAGCACCCCACCCGGCCTGCCGCATCAACAGAGCTCCACCAGGGAGAGTCAGGGATCCCAGGGCTCTCAGGGTGGAACGCCGCAGTCCACGCAGCAGTCCAAATCACATCAGGAACGGCAGCAGGTCCAGCAACAGCATCTGCTCAAGCCTACCATGAGCAAACAGGGCTCTTCACAATCTCCATCCACCCTGAACCCGCAGACCCCTGCCTCTGAGCGGACGGTCGCCTGGGTCTCCAACATGCCCCATCTTTCTGCTGACATAGAGAGTTCCCGCATCGACAGAGAAGAGTTCAAGCTGAAGGAGTACTCCAAGAGCATGGACGAGTCCCGTCTGGACCGGGTGCGCGAGTATGAGGAGGAGATCCACTCACTGAAGGAGCGTCTGATGATGTCCCACCGCAAGTTGGAAGAGTACGAGAGGAGGCTGTTAACTCAGGAGCAGCAGACCAATAAAATCCTGCTGCAGTATCAGAGCCGACTGGACGACAGCGAGAGGAGACTCCGACAGCAGCAGATGGAGAAAGACAACCAAATTAAAGGAATTATTGACAGACTCATGGCGGTGGAGGACGAGTTGAGAGTAGGAGTGGTGCCTGAACACAAACCCAGAGTATTTGCGGATCAGGAAAAGCAGCTTTCCGCCTTGGGTTCAGCAGACCCCGGTGTGAGTTTTGGAGGAGAAATGACCAGCGCTTCTGGCTTTGTTGGAGTCTCCCCTTCGGACAAATCCTCCACCCGATCCCCCCAGAATGGAATCGCGTCCTTCCCGTTAGTTCCCCCTCCTCGTTCAATTCCTCACGCACAACTCTGGCCGAACGGCAACCAAAAATCTGCAATGGATTGGAGGGCAAGTTTGGAGGGGGAGCAGGTCAATAACAACGCTAATCAAATTTGAAAATTTTTTAGGAATTCCGAAGACATTGTAAGGATGAAGCTTcagcagttgttttttttttttttttttgtacattagaCTGAGGACAAGTGGGAGGTGGGACACGTCATTACTTGCACCATCTAAAACAAAAGGGCTCTCCATTGGATTCGATGTGTTATTCTGAAATCACGTTTTCTTTGGATCAAAGTTTAAAGCCCCTTGCACATACAGTACCTCCACCAGGTCATCCAAACCACTGGAAAGTGCTCGATTCAGgttccaggtttttttttttttttgactgagcTCCCTCATCTTGTGTAAAACCAATTCCAAGAAGCTTGGAATGACCCCGGGAATGGTGGGCAAACAAACTATACATACATGTTTAGTGATCAAGATTTGACCCACGAACACATGCCAGCTTTGTCATGTCGTCTGGCTTCCCTAGTGCCTTTCTGTATCTCCTGACAGGGTTTTTAAATGAACATGAGAATAACGACAGCAGAATTGCAGAAACGGTAGTGCAAACTCATTTAGGAGAAATTGATGTGCTCTTCTGCTTTAATGTGACACTGAAAATGTCAAGCTTTGGAGTCCGATCGTGGCTCGGGTTTTTGCGGACAATGTCTGGAAGTGCTTGTGGCTTGAATTGCCTCACAAGACTGAACTTGTGCAATGTTTTCTCTTCTCAATCTCAGAACCTATGTGTATTTAACTGGTGCTATGGATTCTCTGTGTCACGTTCACCGCCTCCCATTTTGTCATCGTCCTAAATGTTCATAATGTGTCTCCCATTCATCTCCTTACAGGCCGATTTTGACATTCTttcggtttgtgtgtgtgtgtgtgtgtgtgcaatgtgAGGTGAGTGCGAGGTGATCTCTGTCAGGTCAAAACCCTTTTTACTAAAACAAGATGCCAGGGCAGAACGCGGTTGTGGTTTTAAGGTGTTTTTATACAAGATGGATATTTTTGGACATTTCTAATAAGAAAAACTTTGTGGGGGGGTTGTGGGGGTAAAGTCAATGTGGAAGTCAACTTGAAAGCAACCAATTTTATGTCCATAAAGTAAAATGGgaaattttactatattttacccTATGGGAATTGACTGAATTGTAATAATAGGTGTTATATACAATAATCCTATCCAATGGCTGAAGAATATAAGGATTTTTTGAGGTCTTGTACAAAAGTGGtgcaagctatattttttcaaaatataatacATGTTTTTTAATTCAGAACAGCATGCACCAAATAATCATGAATAATAAGACCAAGAATGTGCTCTGAAAAGTAAACAAACACTTGCACCTTTTCTTGCATTTTGGCAGAGGTttttattcaaagcgacttaaaatatacatttttgcactTCATACTTTTTTTCTGGGAATCGAACTAATGACAGTAAGCCATTTTGGCCTACATGATTGCTACAAATAAACTACGCAGTGTCCATTTTGATTTCACTTTAAATTTGGATCTCGAAAGTAGTTTTGGGCAGCACTGAGTGATCCTTTTAAGAAGGATCTTGTTAGACGACTCACTCGACAAAATAATCAGAGCTCTGCACTGTACAGAAATATCGCTAGCTATAATCTTTCCTTTCAATATCACTGCCATCTGATACTGATTGTATTCCTCATCGTTCACTGCAGTTTTCGTTTTATCGTTTGTTTTTATGATTAATCGATTCATTGTCATGTTTCTACAGACTCAAGACATTCACGTGGCTTTGCTGATTTACAAGTCATTCATTTTGTAACCCAATTCATGTTGTTGCATTGTAAACACTTCAAGTAGTTCTGTGTGTATCACAGCTACACCAACACAGCAGGCCTAGATGAGAGCGAGGAGGTTTCAATCGTAACTGCACAATAAAATCAAATCGCTGAGCTGTACTGTAATATGTAAAGATTGGGAAGGCACTAGAGAGGAGAATGGACTGATTGCCATTTTAGCTTTTACAAGCTTTGAGGGCTATCTTTAAGTGACTTCTACTCCATTTAGTAATAATATACAGGCAATTTTTGTTTATGTCCCAAAAGCAGTTGAGAACAAAATGGGATAACAGGGTTATCGGCTGATAAATGTGCCATGACATGAATATACCTCAGACGTAGAATCGAATGACTCAGGTAAACTTTCAATTGCCTCACAGTTTAATGcaaactggaaaaaaaagaacacacacattttaagtttAGAACTGCCTGTTTTGGTAGTTAGTCCATTTCTTCTCTGAGATTAGTAGCAGTGATTGGTCAGCGGCTCATCAAGCACCTCCTCTTTTCCCTGCATCTCCAGCCAACAACAAAGCTTCATGGAGGACAATCTGGAACCTAATTGGAGGCCTCACCTAGGACATTCTTCAGGTTGGCCTGGGTTTAATTCCA
>TCONS_00020227
CAGGCTTTTACATGAAGTTCTCTCCATCACATCCCATCTCTCCCCCCTGTCCAGCTTCTCTCTCTTCTCGCCTGCTCGAGTGAAGCAGAGCGCATTTAAGAAAAGGACGGTCGTAGAAGAGGATGCATCGCCCTCCTGCTGAAAACGAGCGATCTGTTTCCGGAATACGTCAAGAATGATTTCCAGTATTTTCTAGCGCAAAGGATCAATGATAACATTTTGGAATTGCCTTGTAATTCATTGCGAACGGACCTCTGATGCGTCGCAGTTTTGTGCAAGAATACACGTCTGAACTTCGGATTTACGCATCGTTGTCACTGGCGACTGAGCTGCGGAGAAGTGCAGCTCCATCAcacttgctcacacacacacatacacacacacacacacacacacacacacacacacacgcacacgcacacacaagttcACATCAGCTGCTGGTGTTTTACAATCTACGGGAGTGTACGCGTAGAATAAACGCCTTAGTCATGTGCGCGCATGCTCCGAAAACTTCCCGCGCAGATCGTTTTAAACGCTAACAGCTCGAACGCAACGGCTATAAATAGAGCTCAGGTAAAACATGAGAGAGTCTCGCCGCAGATCTGGTGCTCGTAACCGCAGTAAAGGCAGAAGGGAAGCGGTTTGTCTGTTCGGGGTTGTGCGTAAAGGCGCCGGTGAGCGTCGCCGGGACCCGGAGCTCTCCATCTGGCGCTCTGCTGAGGAACAGCCGCTGTCGGGGCTGGAGAGATTGACTGTGACGAGGTGGAGAAAAAATGAGACACGACGATTCTAACAGTTAAAACACTTCTTTTTCTACGCGTAGAGGGCGAATTCGCGACTGTAAATATCATTTGTAACAATTAAATGTTTTACTATTCTTGTAGGTATACGTGCGTTTAGATTTTAAAATAGGTATTAGTGAAATACATGTATTCAGATGAGAAATTATCATCATATTTAACCTATTTAATTGCAATAATTCCTCTTTGTAGttagtatttatatttaaacattatacTGATGGCATATTAGCTCTGATTTTTTTACTAACATTTACTATTGGGTATGACATGCGGAGTTGTACAGAATTACATAAGGAATGAAAGTTTGAGAGCCGAGTGCGTTCAGACATATGATTGCAAGCAAACATGTTGTGGTCATCCACCGATCTGCAGAGCTTTAGAGGAACATTTGACCGGCTGATGGGAAGGATTCATTCACAAGTTATACAGAAGCAAGTGACTTAATTGTAAACGGGACTGGAATATGATTGGAGAAGGACCATTTggacattttgtttttcttggtgGCTTGAGATTACTTCTGGATCCTGGACTGGGAATAATTAAGAAGGAATAAGGGATTGTACTGGCTCATACGGTTGCATTTCTGCCTTAGACGCCGCTCGGCTCCGGCGGAAAAGCATCGCCACCGGGAAGCAGCCAAGCATGGAGATCCCACCCACTGCCCCCCCACAACCCTTCCGACAATCCAGTTTCCTCAGTAGAAGACTGAAGGGGTCCATTAAACGGGCCAAGAGTCAGCCCAAGCTGGACCGAACCAGCAGCTTCCGCCACATGATCCTCCCTCGCTTCCGCAGCGCCGACCAGGAGCGGACTCGTCTGATGCAGAGCTTCAAAGAATCACACTCCCATGAGTCTTTGCTGTCTCCCAGCAGCGCAGCCGAGGCCTTGGATTTGACACTTGATGAAGACGCCATCATCAAGCCTGTTCACTCCAGTATATTGGGACAGGAGTACTGTTTCGAGGTGATAACTGCTTCAGGAACAAAGTGTTTTGCCTGTCGGTCGGCTGCGGAGCGAGACAAATGGATCGAGAATCTACAGAGAGCTGTCAAACCCAACAAAGACAACAGTCGGCGTGTCGACAACGTCCTGAAGCTGTGGATCATTGAGGCCCGTGAGCTCCCACCCAAAAAGCGCTATTATTGTGAACTGTGCTTGGATGACATGCTGTACGCTCGCACCACCAGCAAACCCCGTACCGACACTGTCTTCTGGGGTGAGCACTTTGAGTTCAACAACCTGCCTGCTGTCCGCAACCTCCGCCTTCATCTGTACAAAGAGACGGACAAGAAGAGACGCAAGGAGAAGAGCACGTACCTTGGCTTGGTCAGCATTCCCATTTCCAGCATCACTGGCCGTCAGTTTGTGGAGCAATGGTACCCCGTCATTCAGCCCAGTGTTCTGGCCAAGGGTGGCGGCGTCGGAGGAGGGAAGATCATCAATGCCTCGCTGCGGCTCAAGTCACGCTTTCAGACCATGAGCATCCTGCCGATGGAACTGTATAAAGAGTTCGCAGAGTACGTCACAAACAACTACCGGACGCTGTGTGCGGTCCTGGAGCCACTGCTGAGTGTCAAGAGCAAAGAAGAAGTGGCCTGTGCTCTGGTGCACATCCTACAGAGCACAGGGAAGGCCAAGGATTTTCTGTCAGACATGGCGATGTGTGAGGTGGATCGCTTCATCGACCGCGAGCACCTGATCTTCAGAGAAAACACCCTGGCCACCAAAGCCATAGAAGAGTACCTCAAACTCATCGGACACAAGTACCTCAAAGATGTTTTAGGTGATTTTATCCGAGCGCTGTATGAATCAGAGGAGAACTGTGAAGTGGACCCGATGCGAACTCCCCCTTCAATACTGCCCGAACATCAAGCCAACCTCCGGATGTGCTGTGAGCTCGCCCTCTGCAAAATCATCAACTCATATTGTGCGTTCCCGCGAGAGCTGAAGGAAGTGTTTGCATCATGGCGTGTCCGCTGTGCTGAGAGAGGAAGAGAAGACATTGCAGATCGACTGATCAGCGGCTCCCTCTTCCTGCGCTTCCTCTGTCCAGCCATCATGTCTCCATCTCTGTTCAACCTCACGCAGGAATATCCCGATGAGCAGACCTCACGAACACTCACACTCATCGCCAAAGTGGTCCAGAACCTCGCAAACTTCTCCAAGTTTGGCAGTAAGGAGGAGTACATGTGCTTCATGAATGAGTTTCTGGAGATGGAGTGGGGCTCCATGCAGCAGTTTCTCTATGAGATCTCCAATCTGGACAGTGTGAGCAATGCTGGGGCCTTCGAGGGCTACATTGACCTAGGCCGCGAGCTCTCCATCCTGCACAGTCTGCTCTGGGAGGTTATGGCTCAGCTGAGCAAGGATGCCATCATCAAACTTGGACCATTGCCCCGCCTCCTCAATGACATCAGCATGGCCCTCCGCAACCCTCACCTGCAGAggcagcccagtcatcagacagacagacagcctgcagagagacagacagaccgacTGCTGTCCCGACCCAGCTTCAACAGGGGCGTCTCGTCTGAGTTCCAGAATCTCATGATGAGAGACCTTAACAGTTCAGTGGAGATCACTCGTCTGCCCTCTCCAACTTCTGCCATGTCCAGCGGTGGAGCTCCTCCATCCCGTGCAGGAATGGCTGGGTTTGCGGACCGCGATCATCCTCACCGAGCCTCGTCTAAAGATGTTTTCTATGGTGCCCGTCCCCCACTGGCCCGCTCCAGTCCAGCGTACTGTACTAGCAGTTCAGATATTACTGATCCAGACCCAAAGGCCTCGATTGCTGGCCTCGGCAGCTACGGTGGGCTCGCAGGCTTGGGTGGAGGCCTCGGAGGTCAGCTGCGAGCCGGAGGACGTATGTCGGCCGGATCTGGCGGTTCCAGTATGTCCGGGGGTCTGAGGTTGAGCCAGCTGAGCCAGATGGGAACCACTACCGACTCCCTgtcccagcagcagcagcagcaggccgCCGCCCTCCGCTTTCCCCTGTCCTTCCAGAACCCTCTGTTCCACCTCGCTGCTGACGGACCGCAGCTTCACCACCAGCACAGTCGAGCTCAGCCTCCTCCTCCGCTCCTGCTGGCCCCAGAGCCGGACGGTTCTCACCCTACTTATATCCCACAGTTTGCACATGGTGGTTTCTCCCGAAGTGAGGACCTCTCCACCCTCAGACCCGGCCCTCATCTGGGCCAGCCAAGTATTATTCATTCTCACAGCTACAGCGACGACTACAGCCGTCATAACCAGAGCGACTACGGGCGACGACAGATCTCCATGCACATGCAgGAGCAGCAGCAGATGGCAGGCATGGCATCGCAGACTGGCACATCTCATTCATCTCTCGCCACTCCTCCTTCCACTGTTCAACCTGTTCGTCAAAGCTCCATGGCTCCTCCCACGCAGCGCATGAAATCACAACCCTCACATCAGCTTTCTGTGAGCTCTGCCGCTGGTGCCCCTGCGTCCAAAACCAGGCCGCAGAGCGGAAACCTGCTCCAGTCCCCGGAGTCTGGCTTCGGGGGCCGGCAGCAGGGCCCTCGGCAGCAGCTGTCTGTCAAAGACAGCACCCCACCCGGCCTGCCGCATCAACAGAGCTCCACCAGGGAGAGTCAGGGATCCCAGGGCTCTCAGGGTGGAACGCCGCAGTCCACGCAGCAGTCCAAATCACATCAGGAACGGCAGCAGGTCCAGCAACAGCATCTGCTCAAGCCTACCATGAGCAAACAGGGCTCTTCACAATCTCCATCCACCCTGAACCCGCAGACCCCTGCCTCTGAGCGGACGGTCGCCTGGGTCTCCAACATGCCCCATCTTTCTGCTGACATAGAGAGTTCCCGCATCGACAGAGAAGAGTTCAAGCTGAAGGAGTACTCCAAGAGCATGGACGAGTCCCGTCTGGACCGGGTGCGCGAGTATGAGGAGGAGATCCACTCACTGAAGGAGCGTCTGATGATGTCCCACCGCAAGTTGGAAGAGTACGAGAGGAGGCTGTTAACTCAGGAGCAGCAGACCAATAAAATCCTGCTGCAGTATCAGAGCCGACTGGACGACAGCGAGAGGAGACTCCGACAGCAGCAGATGGAGAAAGACAACCAAATTAAAGGAATTATTGACAGACTCATGGCGGTGGAGGACGAGTTGAGAGTAGGAGTGGTGCCTGAACACAAACCCAGAGTATTTGCGGATCAGGGGAGGCGGCAGTCCATCCTAGTGCAGCCCCGCCTTGCGCCCGTCCCACTGCGAATGCACAGCCAACAACAAAGCTTCATGGAGGACAATCTGGAACCTAATTGGAGGCCTCACCTAGGACATTCTTCAGGTTGGCCTGGGTTTAATTCCAGGGCGCTGTCACGCGATTCGGTTGGTTGACAGAGGGGAAACTAAGGCTTTGACTCAATGCCAGAGCCGAtccaaagaaaaacaaatataggTTCCCTTCCTCTGACGTGCCCTCTCTCCGATATAGTTTGATACGATGACGAACGTTTGGGATGCTTAACGCCCATCAGATGGCTTCTTCTTGACGGCATGCAAGATGACGTCGCATGCGACGCAGAAGTTGGATGAGAGAGCTGGAGAGGTTCTGTGGATCAGATCAATCTCAAAGGTGCTGTTTTTTAGGTTCTTTACTAACTACATGTAGGATATTGAACAATACTTCTTCTCATTATGATCTTCACGTGCCACATTAACTCTGCCTGTCATGCTTGCCTGTGTCTCAATCACGTCTTTTATTTTTTGGGGAAACTGAATATGCAcagccttttatttattttttctcaagaGACGCTGATTTGTCCCTCAGCGGATTTGATAAGAGGCTGGAAATATCCGAACTTTTGTTTCCTGGTGGTTTTCTACTCCCTGACTGGACCTCACTCCGATGAGATCACATTTTTACATGCTGGTAATGTgagatcctttttttttttttttgatctggGAATTTATGTGACAATCTCTTTGCAAAGGAAAATCATTGCCCTGCTATTTTACCTGCTCCCCCTCTCCGCACTTTGCTACATCCTGATCCACGACGACTCCTTTTTACGTGAAAGAAAGAtggattattttactttttaactcTCTTTTGTTTTGCTGTGGAGGTTCCTCTTGTTTAGGAAAAGAATCTGGCGCTCGCACATCTGTGGCACAAAGGGGTTATTTTGTGCAGCCAAGTTGCTGTTTTAAATTGACCTTATTTCCCCCTTGTTTGGAAATTGCCATTGCCGGGCAACACAGACATTTCTCTTCTTCCTTTTTACACCACTAGACAAAAATATAAACATCGGTCGAGAGATCATGcaggtctaataatgttgtgagTGACTTTGTGTATATACAGTGTGTGTACAGTCTTTGTGTATATACTGGGTGTGTGGAtggttatataatataaatataaatatatatatatgtattgtacATAAGATATGTTTGTATATGCAGTGTACAGAATGTGTTCTTTTACACCGATTTCCCCTTTTCTCAATATGTGGACAGAAAAAAGTATAAGAGCAGTTTGTGGGAATGAAAACTCATGTTGGCGACTTGTCGGCGGAGGTCTTCGAAGCACTTTTATTTGCTCAGGCTGATTGTACAAAGTCTGAAGCCTACAATGCATCGGCGTGAGTCCGCCACGCGTTTCGCCAGTCTAAAGCTTGCACTCATTTTCTCACTGACTGAGGTGTTTTGTAACAGGTTCTGGGTGATCAAGCAATGCTTGTACATAATTCTATTACCtactgtatgtatgcatatatccACTTTTCCAGACATGAGTCACCTGCTAATCTTTGCAGCTTTTGCATCTCCTCTTGCTTTGGATTTCAATGCggtgccgtgtgtgtgtgtgcgtgtcagaTGAGTTTTTTGGATCGCTGCAGAAGGCCAGTCTCGTGAGAAGATGTTCCCATTTTACTCTACTGACCTTTTGTATGGCCTGACGCTTTATTCCCTCATTACTTGCCTAGCAACTCTTCCATGCAAGTAATCGCTTCTTTGTCCCCTGTAAATGAATGGAGTTCCCATGATGTGCCTCTTTCTAATAAACTTCAGTTGATCTTTGTCAGCCATAAGCCAATCACAGTCATCTTTCTTGACAAGCCATAAGCCCCACCCCTAAATTTCCATTTTCGAAAAGGGCAGACACTTgggaattttatttctttttcgtttttttgtatatatatactatattatattaatagaAAGAGTGCTATGTCAGAGTGTATTGCCGATGTTTTTTGGATTTGTTATGAATGTTGATATTCTGGTTAttgaattatgattattattattattgtaataatataatgACTGCTGTTATCATTTCACCATTCCTTAGTTTATTCAATGCTGTTGAAGACTTTGATTTCCTTTTTGAACAAATCGGAATTTATATTTTTCGGGTGGGCTAATTATAGAAATGAAATCAATTAAACGgatgaataaagaaataaattcttATTGAATTC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-100921-2 Predicted to enable GTPase activator activity. Acts upstream of or within brain morphogenesis and swimming behavior. Is expressed in hindbrain and optic tectum. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 5. Orthologous to human SYNGAP1 (synaptic Ras GTPase activating protein 1).

Ensembl:

ensembl_id ENSDARG00000069765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022026 False 841 lncRNA 0.50 3 45455980 45481848
TCONS_00022025 False 725 lncRNA 0.50 2 45455980 45481848
TCONS_00020226 False 7229 mRNA 0.50 21 45456066 45689083
TCONS_00020227 True 7300 mRNA 0.49 20 45571956 45691220

Neighbor

gene id symbol gene type direction distance location
XLOC_010219 phf1 coding upstream 12175 45424907 ~ 45443805 (+)
XLOC_010218 dnase2 coding upstream 98462 45337663 ~ 45357518 (+)
XLOC_010217 FP016247.1 coding upstream 182261 45217307 ~ 45273719 (+)
XLOC_010216 FP085399.1 coding upstream 249744 45203090 ~ 45206236 (+)
XLOC_010215 cd22 coding upstream 538232 44906324 ~ 44917748 (+)
XLOC_010223 smg5 coding downstream 2193 45693413 ~ 45734213 (+)
XLOC_010224 paqr6 coding downstream 47973 45739193 ~ 45782607 (+)
XLOC_010225 NA coding downstream 95822 45787042 ~ 45812324 (+)
XLOC_010226 rbm8a coding downstream 230955 45922175 ~ 45930077 (+)
XLOC_010227 otud7b coding downstream 239742 45930962 ~ 45982657 (+)
XLOC_010213 CR925804.1 non-coding upstream 750826 44704372 ~ 44705154 (+)
XLOC_010211 CR925804.2 non-coding upstream 850540 44605326 ~ 44605440 (+)
XLOC_010209 NA non-coding upstream 1637415 43765979 ~ 43818565 (+)
XLOC_010228 NA non-coding downstream 297211 45988431 ~ 45990842 (+)
XLOC_010232 NA non-coding downstream 578504 46269724 ~ 46270888 (+)
XLOC_010233 NA non-coding downstream 585724 46276944 ~ 46282156 (+)
XLOC_010240 NA non-coding downstream 864174 46555394 ~ 46569152 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_01651455_01676579 SYNGAP1B coding CI01000027 null 1650811 ~ 1676579 (-)