Gene
RNA
| Item | Value |
|---|---|
| gene id | G255238 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000059 |
| NCBI id | null |
| chromosome length | 10376574 |
| location | 6810802 ~ 6811025 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU289686 | True | 224 | lncRNA | 0.43 | 1 | 6810802 | 6811025 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000059_06743553_06768560 | KIF1C | coding | downstream | 42242 | 6743261 ~ 6768560 (-) |
| CI01000059_06668658_06675615 | SLC25A11 | coding | downstream | 135187 | 6666920 ~ 6675615 (-) |
| CI01000059_06656629_06660298 | SPAG7 | coding | downstream | 150504 | 6656387 ~ 6660298 (-) |
| CI01000059_06642665_06650346 | RNF167 | coding | downstream | 159804 | 6642309 ~ 6650998 (-) |
| CI01000059_06621058_06632392 | WASF3 | coding | downstream | 177893 | 6619898 ~ 6632909 (-) |
| CI01000059_06817935_06848280 | NA | coding | upstream | 6865 | 6817890 ~ 6848280 (-) |
| CI01000059_06914640_06936857 | NA | coding | upstream | 102837 | 6913862 ~ 6936857 (-) |
| CI01000059_07002729_07060398 | DLG4 | coding | upstream | 191652 | 7002677 ~ 7060398 (-) |
| CI01000059_07144283_07150061 | NA | coding | upstream | 332821 | 7143846 ~ 7152701 (-) |
| CI01000059_07156085_07160233 | NA | coding | upstream | 344691 | 7155716 ~ 7160233 (-) |
| G255158 | NA | non-coding | downstream | 9197 | 6797770 ~ 6801605 (-) |
| G255209 | NA | non-coding | downstream | 114459 | 6696050 ~ 6696343 (-) |
| G255205 | NA | non-coding | downstream | 120857 | 6689711 ~ 6689945 (-) |
| G255203 | NA | non-coding | downstream | 124651 | 6685895 ~ 6686151 (-) |
| G255176 | NA | non-coding | downstream | 231255 | 6579090 ~ 6579547 (-) |
| G255719 | NA | non-coding | upstream | 90465 | 6901490 ~ 6903467 (-) |
| G255691 | NA | non-coding | upstream | 121113 | 6932138 ~ 7046601 (-) |
| G255735 | NA | non-coding | upstream | 356481 | 7167506 ~ 7168853 (-) |
| G255740 | NA | non-coding | upstream | 420763 | 7231788 ~ 7231999 (-) |
| G255742 | NA | non-coding | upstream | 423090 | 7234115 ~ 7234338 (-) |
| G255092 | NA | other | downstream | 568010 | 6236106 ~ 6242792 (-) |
| G254203 | NA | other | downstream | 1572503 | 5237786 ~ 5238299 (-) |
| G253914 | NA | other | downstream | 2056720 | 4753538 ~ 4754082 (-) |
| G253013 | NA | other | downstream | 3338893 | 3471475 ~ 3471909 (-) |
| CI01000059_02096875_02098872 | CDC26 | other | downstream | 4711135 | 2094279 ~ 2098985 (-) |
| G256890 | NA | other | upstream | 2170671 | 8981696 ~ 8982117 (-) |
| G257014 | NA | other | upstream | 2643191 | 9454216 ~ 9599008 (-) |
