Gene
RNA
| Item | Value |
|---|---|
| gene id | G255735 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000059 |
| NCBI id | null |
| chromosome length | 10376574 |
| location | 7167506 ~ 7168853 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU290271 | True | 1128 | lncRNA | 0.42 | 3 | 7167506 | 7168853 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000059_07156085_07160233 | NA | coding | downstream | 7273 | 7155716 ~ 7160233 (-) |
| CI01000059_07144283_07150061 | NA | coding | downstream | 14805 | 7143846 ~ 7152701 (-) |
| CI01000059_07002729_07060398 | DLG4 | coding | downstream | 107108 | 7002677 ~ 7060398 (-) |
| CI01000059_06914640_06936857 | NA | coding | downstream | 230649 | 6913862 ~ 6936857 (-) |
| CI01000059_06817935_06848280 | NA | coding | downstream | 319226 | 6817890 ~ 6848280 (-) |
| CI01000059_07212957_07217869 | SLC25A45 | coding | upstream | 44104 | 7212957 ~ 7217869 (-) |
| CI01000059_07222636_07225677 | NA | coding | upstream | 53600 | 7222453 ~ 7225677 (-) |
| CI01000059_07226610_07230853 | NA | coding | upstream | 57757 | 7226610 ~ 7230853 (-) |
| CI01000059_07379550_07383609 | NA | coding | upstream | 210073 | 7378926 ~ 7383674 (-) |
| CI01000059_07399949_07406822 | USP39 | coding | upstream | 231077 | 7399930 ~ 7406992 (-) |
| G255691 | NA | non-coding | downstream | 120905 | 6932138 ~ 7046601 (-) |
| G255719 | NA | non-coding | downstream | 264039 | 6901490 ~ 6903467 (-) |
| G255238 | NA | non-coding | downstream | 356481 | 6810802 ~ 6811025 (-) |
| G255158 | NA | non-coding | downstream | 365901 | 6797770 ~ 6801605 (-) |
| G255209 | NA | non-coding | downstream | 471163 | 6696050 ~ 6696343 (-) |
| G255740 | NA | non-coding | upstream | 62935 | 7231788 ~ 7231999 (-) |
| G255742 | NA | non-coding | upstream | 65262 | 7234115 ~ 7234338 (-) |
| G255697 | NA | non-coding | upstream | 105569 | 7274422 ~ 7327314 (-) |
| G255681 | NA | non-coding | upstream | 152666 | 7321519 ~ 7325568 (-) |
| G255840 | NA | non-coding | upstream | 503195 | 7672048 ~ 7672829 (-) |
| G255092 | NA | other | downstream | 924714 | 6236106 ~ 6242792 (-) |
| G254203 | NA | other | downstream | 1929207 | 5237786 ~ 5238299 (-) |
| G253914 | NA | other | downstream | 2413424 | 4753538 ~ 4754082 (-) |
| G253013 | NA | other | downstream | 3695597 | 3471475 ~ 3471909 (-) |
| CI01000059_02096875_02098872 | CDC26 | other | downstream | 5067839 | 2094279 ~ 2098985 (-) |
| G256890 | NA | other | upstream | 1812843 | 8981696 ~ 8982117 (-) |
| G257014 | NA | other | upstream | 2285363 | 9454216 ~ 9599008 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
