G255681


Basic Information

Item Value
gene id G255681
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 7321519 ~ 7325568 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU290215
GATTGGCTAAAATGATCAACGCATGGGAGCGTTTGAAAGCACACGAAAGTGTTTGAATTTGAAAGCGTTTTGAAAGTGAGAGCGGGAATGTTTAAAAGCAGCAGACCGTCTATCGGCAGACTGGTCCTGCTTTCAAAAGCTCTCGTGTGTATCTGTGTAAACACTCGGTGAAGAGCATCAAAGATGTCTATTTACAACTTGTTTTTGAAGCATTGATCATTGTAGCCAATCACAGACATATCTGTTGAGCGCGTGAACACAAAGGCCAATCAGAGGCGTTTACGAATCCGCTCAAAGCGTCACATTTTTTAAATTTCAGTATCGACTTGGTATCGAAGTCGGTACTTTTGACAACACTAGTGCACTGTAAATATGCCTATATATCTGTTGATCTGTAGAAATAACCTATGTTTCAATCCAAGCAGGAAGTAGAAAGATACCATACTATATCACACTTCATCGTTCATATTTACCATCACCAAGCAACTTACAAAATTACATTCATTCACATTCCAAAGGAACAAGGTTAAATTAGCTGAGCCCAAGTCATAATTCATTTTGAGAAATGAAAGATGAGATGTTTGGTAACGTTTTATGCCTCGTGACCAAACAGGAAAAACAAAACAAAAACAAACAAACCAAAAGGAAAAGATCTAAAAGCTGCCAGATACATTATGGTAATATGCAGGAGATAAGCTTCCTCCATTTTCCATCACATCTTCCTCCTCATCATCCTCCCATCTCACCTGCAGTCCAAGACGGACACGCTTGGTGACGGCTGTCTCGGGAAAACTGGCCTGGGCCAATGGCACCAGCTTACTGGTGAGAGAACCGCCTTCTGGGCCAATCAGATCATTCTCCTGCTGGATACGGGACACCACGGCAAAGTAGAGCGGGAAGTCGGTCGAGATGATCCGCCTGATCCTTTTCTTCCCGAGTTCCTCCTGACTCTCAAGGTCTTCAGCACACCGTCTTCATCCATGCCATTGAGGATGGTCTCCAGGACCTCGTCACCATAACGATTACGATGTTCTTTCCAGACTGATCCATTCTCACTCCTCAAGACCACAAGTTCACGATCTCCCCGACCGAGAGCCGCAAAATGGGGAATCTCAACAATCACAGGCCTTCAGGAGCAAAATGAGTTAAAGTGTTAGACTGCAATTTAAGTTAAGTTTGTAATCTTGTTTTTCTGTCAAAACTGGTTTCCTCACCCCAAAAACTGCATGCTGGCTGGACCAAGAGAGATGATCCGGCTGGCAAGACCCTCACCCTCCACCAAAGGAGGTGGTGTAGCAAGTTTCTGAGGCTTCACCAGGCGGCAGGTGATGCGTGTTGGAGCAGCACAGGTGCGAGGAGGTATGATGACACGCAGGCCGTTGTGTCTGCTCCCTCTCATTGAGCCGCCACGAGCGTCCACCATGAAGCTAACCAAGAAACTGCAGAACCATGAGGACATTAATTCATAATATTTCAATCTCAAGAACTGATTTCCTCCAAAATGTCACCAATGTTTCATGTAGGGGCAGGAAACTAACCCGGTGTGGATGGGACTTGCTACCGGACTGACATTGTCTGACGTCTCTGTGGCCGGACTGCTGGGGATCAGGGAATCCTCATCGTACTCCTTGGCCAAAGGAAGTGGGGTCTGCTGCTGTACCTGCTCAATATCCTGCTCTTTCAGCATGACTGTTTCGGGAGACACACATGGGATCCTTGGAATAGCAGGGGAATGATTCCTATGAAACACAAGTTAAAAATAAGTCTGACACAAAGGAATCAGAAAATGACAGTTCCCATCATAATTCATCTCAGTGGCCTTTCCTCTGTTTGGGCTCTGATCTTTTCTATATTCACACAATAATAAATCTTGTTTGAAATATTCTACGTAATTTCTTCCACCAACATTAATCTGTCCTCTACTTCCTGTTTTATCTGATTCATCTTCAACATCATCACTGCAACTCTCCCTCGTACTCTAGAACTTTCTTGGGGGAAAGGAAATCCTCATCATGGTCCTTTATGTCCTCCATCTTCAAATACCTGGCACCCTCGTTCCCCAGCAGCTCCTCGCCTGCCGCAAGGAGGGACGAGAAGAGAAAAGAAAAAAAGAGAAGTCTTAGTGAAAGGATGTTAAATGTGCCATCAAGAGGAAATGAACGCTGAATGAAAACTGATTGGACAATATGGAGAGGATATCAATGGAGTGAGAGCTGTCGAGTGAGTGAAACATGTTATGACAGGAACAAAGAAGCACCATGGTACTACCAAGGTTCTTTTTAAAGGGATACTTCACCCTAAAATGAAAAGGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU290215 True 2313 lncRNA 0.44 3 7321519 7325568

Neighbor

gene id symbol gene type direction distance location
CI01000059_07226610_07230853 NA coding downstream 90666 7226610 ~ 7230853 (-)
CI01000059_07222636_07225677 NA coding downstream 95842 7222453 ~ 7225677 (-)
CI01000059_07212957_07217869 SLC25A45 coding downstream 103650 7212957 ~ 7217869 (-)
CI01000059_07156085_07160233 NA coding downstream 161286 7155716 ~ 7160233 (-)
CI01000059_07144283_07150061 NA coding downstream 168818 7143846 ~ 7152701 (-)
CI01000059_07379550_07383609 NA coding upstream 53358 7378926 ~ 7383674 (-)
CI01000059_07399949_07406822 USP39 coding upstream 74362 7399930 ~ 7406992 (-)
CI01000059_07418303_07423995 MAT2A, MAT2AA, MAT2AB coding upstream 92524 7418092 ~ 7424051 (-)
CI01000059_07439674_07465822 NA coding upstream 114106 7439674 ~ 7465822 (-)
CI01000059_07486966_07501055 SMTN coding upstream 161270 7486838 ~ 7501461 (-)
G255742 NA non-coding downstream 87181 7234115 ~ 7234338 (-)
G255740 NA non-coding downstream 89520 7231788 ~ 7231999 (-)
G255735 NA non-coding downstream 152666 7167506 ~ 7168853 (-)
G255691 NA non-coding downstream 274918 6932138 ~ 7046601 (-)
G255719 NA non-coding downstream 418052 6901490 ~ 6903467 (-)
G255840 NA non-coding upstream 346480 7672048 ~ 7672829 (-)
G255845 NA non-coding upstream 359069 7684637 ~ 7684845 (-)
G255855 NA non-coding upstream 384025 7709593 ~ 7709962 (-)
CI01000059_07712901_07717294 NA non-coding upstream 386115 7711624 ~ 7717393 (-)
G255866 NA non-coding upstream 436964 7762532 ~ 7762743 (-)
G255092 NA other downstream 1078727 6236106 ~ 6242792 (-)
G254203 NA other downstream 2083220 5237786 ~ 5238299 (-)
G253914 NA other downstream 2567437 4753538 ~ 4754082 (-)
G253013 NA other downstream 3849610 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 5221852 2094279 ~ 2098985 (-)
G256890 NA other upstream 1656128 8981696 ~ 8982117 (-)
G257014 NA other upstream 2128648 9454216 ~ 9599008 (-)

Expression


Co-expression Network