G256626


Basic Information

Item Value
gene id G256626
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8323669 ~ 8324719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU291277
GGGTAATGGGAATACAAACAACGATCCGTCTTTGAAAAAAGCACAATCTGCTTTATTTCTCTCTTGTTGAGATCATTTCCAATAAAAGGGCAAATATGGTAACACATTTAATAGGATAAACAACACTGAGTGATAAATATCTGCAGGGAAAACAGACCCCTAAAAATAAACGTAAAAGTGAGTAAATCCATCACTGGCCCTTTAAATACAAGTCTAACAAAAGCGAAAGGGCAAATAATGAGTCTGTACAGATATTCGGCGATCATCAAGAAGCAAATGAACCTCTAAAATACCCATGAGCACTGGAGAAATCGTTTTAAAAAGGCATTTCAAATGTGCAACAATTCACCCAAAATGAAAAGGACAAGTTTCGATTGCAGTAATGCTCCAATACCAAAGACGAATGAATGTGCTGATGGTTATAGTTCTGTACAGCTGTAGTGTAACGAAGCACCGTCAAAACAAGACATTTCCTGCGCACTTCAAATATTCAATCATGATCCCTGTGAGACAGCAACATCTACAACACAAGCACTCGTTTCACATCAGACGCACATTTGGACCCTGATTGTTACAGAAAGGCTGTTTATTGCTTGTGCCACTCCAGTGACTGACAGACCGCAAAAACTGGAACTCAAAGCAGAAGGTAAAGGGTTTCTGGACCAAATCAATTCATCAAACATACTGTAACAGTTTCCCATCAGCGGCCCAACAACACATTAGACAAGTGGCCAAATATCCCACCCACCCCAAACACAGAGTGAGCTGTTGCTCATGCCTTCAACATGTTTATTCCACACACACACCGTCACTCAAGCGCCATCATGCAACATCTTTAAGGAACAAATGTTGCTTTGCATTTACACAACACATGAAAAGCAGCTTTAAAATAAGAGAGTTCAGCAAAGACGCTTGTGTCCATGTTTAGATTGAATAATGTCCTCAAATTTGGGTTTAAACTTTTTTTATTGAATAAAAGGTGTTCTTTAATAATAATAGAGCAAATAGGCATGATTACTAATATATATATATATATATATATATATATATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU291277 True 1051 lncRNA 0.37 1 8323669 8324719

Neighbor

gene id symbol gene type direction distance location
CI01000059_08286190_08290114 EDF1 coding downstream 33555 8286100 ~ 8290114 (-)
CI01000059_08263161_08266360 OXT coding downstream 57309 8262997 ~ 8266360 (-)
CI01000059_08251075_08251545 NA coding downstream 72124 8250954 ~ 8251545 (-)
CI01000059_08221332_08227552 NA coding downstream 96117 8221270 ~ 8227552 (-)
CI01000059_08188428_08219512 ABL1 coding downstream 104157 8188054 ~ 8219512 (-)
CI01000059_08334902_08338268 NA coding upstream 10024 8334743 ~ 8338268 (-)
CI01000059_08354408_08356482 PLPP7 coding upstream 27889 8352608 ~ 8356552 (-)
CI01000059_08360308_08360726 NA coding upstream 35046 8359765 ~ 8360807 (-)
CI01000059_08382830_08423907 NA coding upstream 57653 8382372 ~ 8424724 (-)
CI01000059_08434015_08446002 NACC2 coding upstream 108976 8433695 ~ 8446002 (-)
G256628 NA non-coding downstream 40464 8282110 ~ 8283205 (-)
G256643 NA non-coding downstream 61988 8261465 ~ 8261681 (-)
G256636 NA non-coding downstream 72878 8249522 ~ 8250791 (-)
G256633 NA non-coding downstream 89161 8234221 ~ 8234508 (-)
G256571 NA non-coding downstream 140658 8181656 ~ 8183011 (-)
G256669 NA non-coding upstream 157805 8482524 ~ 8482767 (-)
CI01000059_08483765_08492276 NA non-coding upstream 158726 8483445 ~ 8492818 (-)
G256700 NA non-coding upstream 223176 8547895 ~ 8548638 (-)
G256709 NA non-coding upstream 257320 8582039 ~ 8582374 (-)
G256712 NA non-coding upstream 263679 8588398 ~ 8588626 (-)
G255092 NA other downstream 2080877 6236106 ~ 6242792 (-)
G254203 NA other downstream 3085370 5237786 ~ 5238299 (-)
G253914 NA other downstream 3569587 4753538 ~ 4754082 (-)
G253013 NA other downstream 4851760 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 6224002 2094279 ~ 2098985 (-)
G256890 NA other upstream 656977 8981696 ~ 8982117 (-)
G257014 NA other upstream 1129497 9454216 ~ 9599008 (-)

Expression


Co-expression Network