G256876


Basic Information

Item Value
gene id G256876
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8944513 ~ 8947153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU291558
GGCAGCTTATATATTCTTGCATATGCACATACATTTTCAAACATTACAATAATAACCACAAATGTTAGATTAAAAAGCAGTCATAGCATGTATTTCTGTCCTGTCGGTAAACACACACTCGCATTCAGAAATTGCTTTCTCTGAAGAAGTTACCATAGCAACAGAGGCTGTTCCAGCACTTTTCATTAGGATCATTATTGGACGGAACATTGATAAAACTATTTATTAACATATCACAATTATATAATTACAAAACATCAGTGTTTTATTATACAATAGTCTTTAATGTCATTGATGTTTGTGCATGATCACCATAAATAGACTCTCTATAGAAATATCGGTGACAGCCTTTATGTATAAAGCATTATATAAGGTATTTATAACGTACATTATAATGCATTATATATTTTCATAAATAATTGTAAGCAAAGTTAAAATGCATTATAGTATTGGCAGATCCCTTGTTACATCTGGTTGTTTGTCATGTGTTTTAATACTTTCTAAAGGTGTAACAAGGAATAAATGAGTATTATAATGTATTATAATTGCGGTTGCAATTATTCATCAGATAAGGTGCATTACTATGCATAATTAATGCATTAAACATTATAAAAACATTACATGTTTATAATGCATTATATATAAAGGCTTTATTACTTTTTTTTTTATTATTAACAAACAGATTTTAATAAAATCTGTTGGAAATATATTGCTCAGTGTTGGCTAATGCATTAACTAATGTTAACAAATGAAAATGTTAGCCAAAAAATATAACCTTTGCACAATTCCTTTAATGTAATTCAGTTTTGTCACAATGTGCAGCACATAATCTGCCAGGATGACAAAAAGTTTATTTTGCGACATCAGAATTGGATTTTGCCTGGCACTTTTTGCAAAACACAATTTCAAATGCATTGGCAATTGCAAAACCTCAACAAGAACCAACAATCATGTGGCAATCACGATTGTCCAGCGTGATAGAGGGAAAAACAAAAGCAAAAACATTTTGATATTGAATCCAAATCAAGGCCTCTAATCAACACAACTGCCAGCGGTTGTCGTGATGAAGCGATGAGCATCAGTCGTGATTCGCCATTGGCCAGATTTCATTCTCACTAATCTCAAAATTGGTTTGATTAGCATCTCATTTGGCAGTGAATCAAATGCACATAGTTCCTGTAATGAAGTGAAAATTGAAAATTCTTGAGACATGAAATGCATTCACTGAGTGATTTGCTAATAATCCAAAGAAATACGTTTCATTTCAGTCGAGGCTCAACAGCTGATACTACTTTAAAGAAGCATCTATTTTCATAAATGCTGAGCTGGGAGTTGGACATTGGAAATGTCCATTCAGCACCTGTCTAAAGTCTAAAATCTTGAGCGTGTTAACATGGTAAAAGTGCCACAGCAGCAGCAGTCACTGCTGAACTTCTGCAACTCCACTGGACCTTCAGATCAGAAGTAAATGAGCTGCAGATGATCGTACTGACATTAACTTTTGCTTGATAGATTGTTGTGTAGTGACTGTTAATGTGGTGTTTTAGATTGTTAAATGCAAGATAGAAATGAAGGCACTTTATGAATTATATATTTGAGCAATATCACATAAATAAGTGCGACTCAGGGTTAGAAATCACGCTCTAGCTCGTTTTCAGATCAACGCCCGGCTGTGAGTTTGAGTTCAGCTCAATAAACAAATAATAATGTTAATATCAAGTAACTTGTCACAGACAAAAATTGTTCAGCTTTTTTGTCCAAAATTGTCTTTTTTTCTCTCTGAAAGTACTTGCAAAACAAGCCAAAGGATCAAGCTTTACATGTGGACCAACAGCAAAGTGTTTGTAAATAGATTAAAAAAAAAAAAAAAGTGTTTTTTTTCAAGACAGAAGTTTGAAAGTTTCAGGGCCAGAAAAATGCCCAGGTTAATTAACACTGCTTAGTGTTCATGTGTGTGCACACTACTGAGTTAAAGTACCATTGAAGCAGTGTCTAAGTTAATGAGATAATTAAGTGATGATTGAACATTAATGATGAACACCTGCTGTTAACAAGCAGAATCTCTGAAGGAAAGAGAAACACAAGAACTACAACTGACTTCACTCACAGTCTTTGATGAATTCAACTGAAAATAAAAGACATTTAATCTCTACAAACTCTACAAAACATTACCAGCTTCACTCATTACTAACTAGACTGACTTTATTTCTGTCATACATCTACAGAAGATCTTATTGAGAATTAACAGAGGTTTTGATGTAGATGATTTATTGAGATTCATTTGAAGTTACCATCTTTTAGGTCAGTGTTGGCTTTAATTGGGCTCTTGACTTTATTGCATCAATTGTTCTCTAACTGCTGTAACTGAATGTTTATAAAACACATTTGTTATGGCATAAATGTCAAGAAAATATATGATCAGGTACTGGTGGTTAAGTGGTGATGATGAGATTCATCATTTAATGACCTGATTCATTGATCTTATTCAGACTTTAATCTCCTTCAGTGATTCTGCTTGAAGCTCATAATCAATTCTGAAATTCTCAGAATCAATCCAGAATTGTTGGAGAGAGAGAGAGACAGACAGACAGACATTCTAGACTGGAAGCAAAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291558 True 2615 lncRNA 0.33 2 8944513 8947153

Neighbor

gene id symbol gene type direction distance location
CI01000059_08541617_08550032 LHX3 coding downstream 394481 8541161 ~ 8550032 (-)
CI01000059_08483765_08492276 NA coding downstream 451695 8483445 ~ 8492818 (-)
CI01000059_08434015_08446002 NACC2 coding downstream 498511 8433695 ~ 8446002 (-)
CI01000059_08382830_08423907 NA coding downstream 519789 8382372 ~ 8424724 (-)
CI01000059_08360308_08360726 NA coding downstream 583706 8359765 ~ 8360807 (-)
CI01000059_09346204_09347082 NA coding upstream 399035 9346188 ~ 9348023 (-)
CI01000059_09706218_09708197 TRIM32 coding upstream 758117 9705270 ~ 9709619 (-)
CI01000059_09783667_09789126 NA coding upstream 836476 9783629 ~ 9789298 (-)
CI01000059_09797419_09887264 PAPPAA, PAPPA coding upstream 850227 9797380 ~ 9887264 (-)
CI01000059_09908635_09925766 ZNF618 coding upstream 960734 9907887 ~ 9925766 (-)
G256840 NA non-coding downstream 73630 8870621 ~ 8870883 (-)
G256807 NA non-coding downstream 111853 8808655 ~ 8832660 (-)
G256781 NA non-coding downstream 220052 8724244 ~ 8724461 (-)
G256779 NA non-coding downstream 225710 8718551 ~ 8718803 (-)
G256697 NA non-coding downstream 232148 8710841 ~ 8712365 (-)
G256820 NA non-coding upstream 9316 8956469 ~ 9006364 (-)
G256883 NA non-coding upstream 16143 8963296 ~ 9012747 (-)
G256894 NA non-coding upstream 42765 8989918 ~ 8990277 (-)
G256898 NA non-coding upstream 49230 8996383 ~ 8998793 (-)
G256929 NA non-coding upstream 104264 9051417 ~ 9051634 (-)
G255092 NA other downstream 2701721 6236106 ~ 6242792 (-)
G254203 NA other downstream 3706214 5237786 ~ 5238299 (-)
G253914 NA other downstream 4190431 4753538 ~ 4754082 (-)
G253013 NA other downstream 5472604 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 6844846 2094279 ~ 2098985 (-)
G256890 NA other upstream 34543 8981696 ~ 8982117 (-)
G257014 NA other upstream 507063 9454216 ~ 9599008 (-)

Expression


Co-expression Network