G256820


Basic Information

Item Value
gene id G256820
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8956469 ~ 9006364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU291501
CTGGGCATCTGGTGGTTGGGGTTGTGGTGGCAGCGGATGCTCAGGCCGAAGAGTTTACGGGCCGTGCGCTGGATCTTCAGTCTCTGGGCCTCCAGAGAACTCTGCAAGAGCCGATAGCGGTTCTGAAGGTCCCAGTCGCTGCCCCACAGCAGGTGCACGCTGCTCACGGGGAGGAAATGCGTCGCGGGCAGCCGCTTCAGAAAAGACTTAAACTCATCTGAGTTCTCGAAGTCGTTGTAAGACGCTTCCCAAGTCTCCGCCATGCCGATGAGCGTGTTCTCCATGATCTGGAGGTCAGTCGTGGGACAGTTGCATTGTGGGAACTCGTCAGCACACTGACAGATGCACTGGCTGTTCTGGCAGATGTATTCACCCTCCCCATTACACATGATGTAGCTGAGAGCCGACTGGACGAACTTCTCCTGCAGGTACTCGGGGAAAATGACCTGCAAACCTTGCAGATGGAGTTTGCTCTCCGGGCTCTGAAGAAGAACAGAACTGACCGAGTCCAGATTATCGTACGTGCTGCAGCCCAGCGGACCCGTCCGTGTCTCCGTCACCTTGATGGCGTTGCTGGAGATCTGAATCTCGTGGAGTTTGCGCATGGTGCCGTCGCGGTCGATGAAGTACGATGAGGCGAGCTGGTGCAGTGCCTCGACTCCTTGGGTGGCGTTGACCATCTTCCGGTCCAGCTTGTTCTTGGCCATGTACATGGTGAGAGCTTCCTCACCTAATGGCACAGAGCAATATGGTCAGTTAACGCAAGACTTCACTTCCCGTGATTCAGATGCCAAGAGTTAAAATATCACATTCTCAGAAGCTCATTT
>TU291500
CTGGGCATCTGGTGGTTGGGGTTGTGGTGGCAGCGGATGCTCAGGCCGAAGAGTTTACGGGCCGTGCGCTGGATCTTCAGTCTCTGGGCCTCCAGAGAACTCTGCAAGAGCCGATAGCGGTTCTGAAGGTCCCAGTCGCTGCCCCACAGCAGGTGCACGCTGCTCACGGGGAGGAAATGCGTCGCGGGCAGCCGCTTCAGAAAAGACTTAAACTCATCTGAGTTCTCGAAGTCGTTGTAAGACGCTTCCCAAGTCTCCGCCATGCCGATGAGCGTGTTCTCCATGATCTGGAGGTCAGTCGTGGGACAGTTGCATTGTGGGAACTCGTCAGCACACTGACAGATGCACTGGCTGTTCTGGCAGATGTATTCACCCTCCCCATTACACATGATGTAGCTGAGAGCCGACTGGACGAACTTCTCCTGCAGGTACTCGGGGAAAATGACCTGCAAACCTGAAAACGGGAAAGAGAATCGATGTTAAAGTCATTACAGACATTATTGATTTCACTTCAGCGAGCAACAGATAGAAAGTGCTGCAGATAGTCGATGACAGAACTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291501 False 827 lncRNA 0.55 4 8956469 9006364
TU291500 True 562 lncRNA 0.53 2 8997393 9006364

Neighbor

gene id symbol gene type direction distance location
CI01000059_08541617_08550032 LHX3 coding downstream 406437 8541161 ~ 8550032 (-)
CI01000059_08483765_08492276 NA coding downstream 463651 8483445 ~ 8492818 (-)
CI01000059_08434015_08446002 NACC2 coding downstream 510467 8433695 ~ 8446002 (-)
CI01000059_08382830_08423907 NA coding downstream 531745 8382372 ~ 8424724 (-)
CI01000059_08360308_08360726 NA coding downstream 595662 8359765 ~ 8360807 (-)
CI01000059_09346204_09347082 NA coding upstream 339824 9346188 ~ 9348023 (-)
CI01000059_09706218_09708197 TRIM32 coding upstream 698906 9705270 ~ 9709619 (-)
CI01000059_09783667_09789126 NA coding upstream 777265 9783629 ~ 9789298 (-)
CI01000059_09797419_09887264 PAPPAA, PAPPA coding upstream 791016 9797380 ~ 9887264 (-)
CI01000059_09908635_09925766 ZNF618 coding upstream 901523 9907887 ~ 9925766 (-)
G256876 NA non-coding downstream 9316 8944513 ~ 8947153 (-)
G256840 NA non-coding downstream 85586 8870621 ~ 8870883 (-)
G256807 NA non-coding downstream 123809 8808655 ~ 8832660 (-)
G256781 NA non-coding downstream 232008 8724244 ~ 8724461 (-)
G256779 NA non-coding downstream 237666 8718551 ~ 8718803 (-)
G256929 NA non-coding upstream 45053 9051417 ~ 9051634 (-)
G256947 NA non-coding upstream 109614 9115978 ~ 9116179 (-)
G256951 NA non-coding upstream 120416 9126780 ~ 9280018 (-)
G257020 NA non-coding upstream 361443 9367807 ~ 9369543 (-)
G257031 NA non-coding upstream 378309 9384673 ~ 9415201 (-)
G255092 NA other downstream 2713677 6236106 ~ 6242792 (-)
G254203 NA other downstream 3718170 5237786 ~ 5238299 (-)
G253914 NA other downstream 4202387 4753538 ~ 4754082 (-)
G253013 NA other downstream 5484560 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 6856802 2094279 ~ 2098985 (-)
G257014 NA other upstream 447852 9454216 ~ 9599008 (-)

Expression


Co-expression Network