G256890


Basic Information

Item Value
gene id G256890
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 8981696 ~ 8982117 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU291574
GACAGGACGACTGGTTGCAATCGAGGGAAAGATGAATGTGGCCAAGTACAGGGATATCCTGGACGAAAACCTTCTCCAGAGTGCTCAGGACCTCAGACTGGGCCGAAGGTTTACCTTCCAACAAGACAATGACCCTAAGCACACAGCTAAAACAACGAAGGAGTGGCTTCACAACAACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTTACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGACTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGC
>TU291575
GACAGGACGACTGGTTGCAATCGAGGGAAAGATGAAATGGGCCAAGTACAGGGATATCCTGGACGAAAACCTTCTCCAGAGTGCTCAGGACCTCAGACTGGGCCGAAGGTTTACCTTCCAACAAGACAATGACCCTAAGCACACAGCTAAAACAACGAAGGAGTGGCTTCACAACAACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTTACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGACTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU291574 False 402 TUCP 0.48 2 8981696 8982117
TU291575 True 402 TUCP 0.48 2 8981696 8982117

Neighbor

gene id symbol gene type direction distance location
CI01000059_08541617_08550032 LHX3 coding downstream 431664 8541161 ~ 8550032 (-)
CI01000059_08483765_08492276 NA coding downstream 488878 8483445 ~ 8492818 (-)
CI01000059_08434015_08446002 NACC2 coding downstream 535694 8433695 ~ 8446002 (-)
CI01000059_08382830_08423907 NA coding downstream 556972 8382372 ~ 8424724 (-)
CI01000059_08360308_08360726 NA coding downstream 620889 8359765 ~ 8360807 (-)
CI01000059_09346204_09347082 NA coding upstream 364071 9346188 ~ 9348023 (-)
CI01000059_09706218_09708197 TRIM32 coding upstream 723153 9705270 ~ 9709619 (-)
CI01000059_09783667_09789126 NA coding upstream 801512 9783629 ~ 9789298 (-)
CI01000059_09797419_09887264 PAPPAA, PAPPA coding upstream 815263 9797380 ~ 9887264 (-)
CI01000059_09908635_09925766 ZNF618 coding upstream 925770 9907887 ~ 9925766 (-)
G256876 NA non-coding downstream 34543 8944513 ~ 8947153 (-)
G256840 NA non-coding downstream 110813 8870621 ~ 8870883 (-)
G256807 NA non-coding downstream 149036 8808655 ~ 8832660 (-)
G256781 NA non-coding downstream 257235 8724244 ~ 8724461 (-)
G256779 NA non-coding downstream 262893 8718551 ~ 8718803 (-)
G256894 NA non-coding upstream 7801 8989918 ~ 8990277 (-)
G256898 NA non-coding upstream 14266 8996383 ~ 8998793 (-)
G256929 NA non-coding upstream 69300 9051417 ~ 9051634 (-)
G256947 NA non-coding upstream 133861 9115978 ~ 9116179 (-)
G256951 NA non-coding upstream 144663 9126780 ~ 9280018 (-)
G255092 NA other downstream 2738904 6236106 ~ 6242792 (-)
G254203 NA other downstream 3743397 5237786 ~ 5238299 (-)
G253914 NA other downstream 4227614 4753538 ~ 4754082 (-)
G253013 NA other downstream 5509787 3471475 ~ 3471909 (-)
CI01000059_02096875_02098872 CDC26 other downstream 6882029 2094279 ~ 2098985 (-)
G257014 NA other upstream 472099 9454216 ~ 9599008 (-)

Expression


Co-expression Network