XLOC_001024


Basic Information

Item Value
gene id XLOC_001024
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9420824 ~ 9422275 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003340
TATTGATTTAGGTAGCATGATGAAAAGATTGTCATCTCATAGTTAATTTTAGCTTTAGCTTTTAATAGCTACCTAATATGGTTTCAATGTAGGCtttgataaaacatttttttcactaatgctgtgtttaaaaatgttactGTTGTTGGTTTGTATTGTAATGCTACTTTGTCGAGTACAATTGGCTAATCACCACGATAAACTGTTTTATACATTATGTCCATTTCTGCGCTGAACCTGTGAACATGTGAACATGCTAACTGCCTCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTTCTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattattgtctatatGGTATTATTGTCCTAATaactaaaaatacaataaaaaaatgttatgcaTACATTATGGTTGTTAATTTTGTCTCTTTCCTCATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGGTATGTTTAGAACTGTATTTTATTACTTATGCAACTAAGGGTGTTTTCTCTGTATTTTAGCAAACATGGTAAattcttttaaacaaaacaaaatacacaaatacataaaataaatgttctgtCATATTTTACCCAAGCTTTCATTCACCTTTGgaaaacattatattaaatttacTAAATTACTCAATTTTAGTTGTTTAACACATGAGCTATGTTGAtcataaatattaagttaaataaatcacaaacatTGCAGTGACAATTTCACAATACACAGTATATACACGTTGATTTCAGTGGCTGTCCAGGTGGGTCCACAGTCAACATTTTCAAATGCATTTATTGTGTTAAAAGAACAGGGCTTTGAGACTAAGTAAAATTATGTCAGCTTCCCTCACATATATTTTCAAATAGGCAGTAGAAAATATAATTTCATGTGACTgctgacattgtttttttcttttaattgttttaggaGAAAAACCAGGAAGCTACATTCATAAATGGATGGTCAGTTTTGAGGGGCAAATAATCTGAGAGAGCATCCAGCCAAGTTTTCTGTCTGGTATAGCTGCTGTGTTTTCAACTTACGACATTTTCGATGTGGAGAACCAAGCTGAGGCTGCATGCACATTGGAATTAATTCAGAGGTTAGACgcttaaattaatatatttatttctcttCACATTATTATTGTATAAACTTTAACCCACACTAATTCTGAATATGTGCACTTTTTTAGGAGCTTCATTGGTAAACCCTAAGGCTCCAAGAGTGGACACATCCTATCGAAGGGAATGGGGAAGGTCACCCACAAAATGAATTCAGTCAACACTAAGGTTGCCAGTTTACTTAAAGAAGCTAATGGACTTTGAGTTGGATGTCATATAAgcgtccccccccccccccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003340 True 1452 lncRNA 0.33 1 9420824 9422275

Neighbor

gene id symbol gene type direction distance location
XLOC_001023 AL954703.1 coding downstream 98893 9308271 ~ 9321931 (-)
XLOC_001022 ubn1 coding downstream 142787 9258931 ~ 9278037 (-)
XLOC_001021 zgc:136472 coding downstream 170881 9234928 ~ 9249943 (-)
XLOC_001020 si:dkeyp-57d7.4 coding downstream 188872 9230244 ~ 9231952 (-)
XLOC_001019 gng13a coding downstream 192817 9227081 ~ 9228007 (-)
XLOC_001025 micall2b coding upstream 37485 9459760 ~ 9486214 (-)
XLOC_001026 si:ch73-12o23.1 coding upstream 77370 9499645 ~ 9527200 (-)
XLOC_001027 ugt5b5 coding upstream 204002 9626277 ~ 9629724 (-)
XLOC_001028 ugt5b2 coding upstream 206886 9629161 ~ 9652725 (-)
XLOC_001029 mad1l1 coding upstream 317095 9739370 ~ 9858508 (-)
XLOC_001018 BX004779.1 non-coding downstream 222858 9197859 ~ 9197966 (-)
XLOC_001016 BX004779.2 non-coding downstream 258187 9157310 ~ 9162637 (-)
XLOC_001015 NA non-coding downstream 281664 9138638 ~ 9139160 (-)
XLOC_001010 NA non-coding downstream 338052 9081842 ~ 9082772 (-)
XLOC_001031 NA non-coding upstream 494101 9916376 ~ 9918812 (-)
XLOC_001037 CR854964.1 non-coding upstream 847972 10270247 ~ 10272725 (-)
XLOC_001044 NA non-coding upstream 1249577 10671852 ~ 10682149 (-)
XLOC_001045 NA non-coding upstream 1316890 10739165 ~ 10740441 (-)
XLOC_001049 BX323090.1 non-coding upstream 1447842 10870117 ~ 10870241 (-)

Expression


Co-expression Network