Gene
RNA
| Item | Value |
|---|---|
| gene id | G257276 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000059 |
| NCBI id | null |
| chromosome length | 10376574 |
| location | 9975614 ~ 9976040 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU291977 | True | 427 | lncRNA | 0.41 | 1 | 9975614 | 9976040 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000059_09908635_09925766 | ZNF618 | coding | downstream | 49848 | 9907887 ~ 9925766 (-) |
| CI01000059_09797419_09887264 | PAPPAA, PAPPA | coding | downstream | 88350 | 9797380 ~ 9887264 (-) |
| CI01000059_09783667_09789126 | NA | coding | downstream | 186316 | 9783629 ~ 9789298 (-) |
| CI01000059_09706218_09708197 | TRIM32 | coding | downstream | 265995 | 9705270 ~ 9709619 (-) |
| CI01000059_09346204_09347082 | NA | coding | downstream | 627591 | 9346188 ~ 9348023 (-) |
| CI01000059_09990989_09995182 | RGS3A, RGS3 | coding | upstream | 13463 | 9989503 ~ 9995251 (-) |
| CI01000059_09996144_10002811 | NA | coding | upstream | 20013 | 9996053 ~ 10002862 (-) |
| CI01000059_10006537_10067807 | NA | coding | upstream | 30405 | 10006445 ~ 10067845 (-) |
| CI01000059_10078245_10087217 | NA | coding | upstream | 102162 | 10078202 ~ 10087217 (-) |
| CI01000059_10112766_10123616 | DNAJC25 | coding | upstream | 136270 | 10112310 ~ 10123616 (-) |
| G257275 | NA | non-coding | downstream | 1019 | 9974360 ~ 9974595 (-) |
| G257272 | NA | non-coding | downstream | 6939 | 9968436 ~ 9968675 (-) |
| G257270 | NA | non-coding | downstream | 10346 | 9965042 ~ 9965268 (-) |
| G257245 | NA | non-coding | downstream | 199139 | 9776206 ~ 9776475 (-) |
| G257244 | NA | non-coding | downstream | 200245 | 9775153 ~ 9775369 (-) |
| G257282 | NA | non-coding | upstream | 34040 | 10010080 ~ 10010806 (-) |
| G257299 | NA | non-coding | upstream | 121676 | 10097716 ~ 10097915 (-) |
| G257063 | NA | non-coding | upstream | 140325 | 10116365 ~ 10204537 (-) |
| G257085 | NA | non-coding | upstream | 226374 | 10202414 ~ 10203467 (-) |
| G257073 | NA | non-coding | upstream | 230808 | 10206848 ~ 10207701 (-) |
| G257014 | NA | other | downstream | 376606 | 9454216 ~ 9599008 (-) |
| G256890 | NA | other | downstream | 993497 | 8981696 ~ 8982117 (-) |
| G255092 | NA | other | downstream | 3732822 | 6236106 ~ 6242792 (-) |
| G254203 | NA | other | downstream | 4737315 | 5237786 ~ 5238299 (-) |
| G253914 | NA | other | downstream | 5221532 | 4753538 ~ 4754082 (-) |
